Development and persistence of DAA resistance associated mutations in patients failing HCV treatment

Stefania Paolucci1, Loretta Fiorina1, Bianca Mariani1

  • 1Molecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, 27100, Pavia, Italy.

Abstract

Insights

Hepatitis C virus (HCV) resistance-associated mutations (RAMs) frequently emerge during treatment with direct-acting antiviral agents (DAAs), impacting treatment success. Genotype 1a strains showed higher failure rates, and resistance can persist post-therapy.

Area of Science:

  • Hepatology
  • Virology
  • Pharmacogenomics

Background:

  • Standard treatment for genotype 1 Hepatitis C Virus (HCV) involves direct-acting antiviral agents (DAAs) with pegylated-interferon (PegIFN) and ribavirin (RBV).
  • Virologic response to these therapies can be compromised by pre-existing or emerging HCV resistance-associated mutations (RAMs).

Purpose of the Study:

  • To investigate the emergence and persistence of RAMs in the NS3 and NS5B genes.
  • To analyze RAMs in DAA-naïve patients experiencing treatment failure.

Main Methods:

  • Direct sequencing of the HCV NS3 gene was performed.
  • Analysis included 49 DAA-naïve patients with HCV genotype 1 infection.

Main Results:

  • Treatment failure occurred in 34.7% of patients on PegIFN/RBV/telaprevir and 22.2% on PegIFN/RBV/boceprevir.
  • RAMs at specific amino acid positions (36, 54, 80, 155) were identified in 75% of telaprevir failures and 50% of boceprevir failures.
  • Drug-resistant variants persisted for up to 3-7 months post-therapy in 60% of patients.

Conclusions:

  • Telaprevir-based regimens showed a higher failure rate compared to boceprevir-based regimens.
  • HCV genotype 1a was significantly associated with higher treatment failure rates due to resistant strains.
  • Baseline and on-treatment resistance testing is recommended for optimizing novel HCV combination therapies.

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