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Updated: Mar 31, 2026

An Affordable HIV-1 Drug Resistance Monitoring Method for Resource Limited Settings
Published on: March 30, 2014
Development and persistence of DAA resistance associated mutations in patients failing HCV treatment
Stefania Paolucci1, Loretta Fiorina1, Bianca Mariani1
1Molecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, 27100, Pavia, Italy.
Background:
Direct-acting antiviral agents (DAAs) combined with pegylated-interferon (PegIFN) and ribavirin (RBV) are still a standard treatment in patients with genotype 1HCV infection. However, virologic response could be impaired by baseline or early selection of resistant HCV strains.
Objectives:
The aim of this study was to determine the onset and persistence of resistance-associated mutations (RAMs) in the NS3 and NS5B genes of DAA-naïve patients failing treatment.
Study Design:
Direct sequencing of HCV NS3 was performed in 49 DAA-naïve patients with HCV genotype 1 infection.
Results:
Eight out of 23 patients (34.7%) failed PegIFN/RBV/telaprevir during the 12-weeks of therapy. Treatment failure was associated with the development of RAMs at amino-acids 36,54,80 and 155 of the HCV protease in 6/8 patients (75%). Among patients treated with PegIFN/RBV/boceprevir treatment, 4/18 (22.2%) failed therapy. Of these, 2 (50%) carried virus strains which developed a RAM at amino-acids 54 and 155. Among HCV strains with RAMs, 7 belonged to genotype 1a and 1 to 1b. Finally, in 6/10 (60%) patients, drug-resistant variants could still be detected for up to 3-7 months after stopping therapy.
Conclusions:
A higher rate (p=0.49) of treatment failure was observed in patients receiving telaprevir- compared to the boceprevir-based combination. In addition, compared with genotype 1b, genotype 1a was associated with higher rates (p=0.01) of treatment failure due to virus resistant strains. Resistance testing at baseline and during DAA treatment should be taken into consideration when treating patients with new HCV combination therapies.
Insights
Hepatitis C virus (HCV) resistance-associated mutations (RAMs) frequently emerge during treatment with direct-acting antiviral agents (DAAs), impacting treatment success. Genotype 1a strains showed higher failure rates, and resistance can persist post-therapy.
Area of Science:
- Hepatology
- Virology
- Pharmacogenomics
Background:
- Standard treatment for genotype 1 Hepatitis C Virus (HCV) involves direct-acting antiviral agents (DAAs) with pegylated-interferon (PegIFN) and ribavirin (RBV).
- Virologic response to these therapies can be compromised by pre-existing or emerging HCV resistance-associated mutations (RAMs).
Purpose of the Study:
- To investigate the emergence and persistence of RAMs in the NS3 and NS5B genes.
- To analyze RAMs in DAA-naïve patients experiencing treatment failure.
Main Methods:
- Direct sequencing of the HCV NS3 gene was performed.
- Analysis included 49 DAA-naïve patients with HCV genotype 1 infection.
Main Results:
- Treatment failure occurred in 34.7% of patients on PegIFN/RBV/telaprevir and 22.2% on PegIFN/RBV/boceprevir.
- RAMs at specific amino acid positions (36, 54, 80, 155) were identified in 75% of telaprevir failures and 50% of boceprevir failures.
- Drug-resistant variants persisted for up to 3-7 months post-therapy in 60% of patients.
Conclusions:
- Telaprevir-based regimens showed a higher failure rate compared to boceprevir-based regimens.
- HCV genotype 1a was significantly associated with higher treatment failure rates due to resistant strains.
- Baseline and on-treatment resistance testing is recommended for optimizing novel HCV combination therapies.
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