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Updated: Mar 31, 2026

Tracking Single Proteins in Lipid Bilayers Using Fluorescence Microscopy
Published on: December 12, 2025
Insertion and self-diffusion of a monotopic protein, the Aquifex aeolicus sulfide quinone reductase, in supported
Frédéric Harb1,2, Laurence Prunetti3, Marie-Thérèse Giudici-Orticoni3
1Department of Biology, Faculty of Sciences - Section II, Lebanese University, Beirut, Lebanon.
Abstract:
Monotopic proteins constitute a class of membrane proteins that bind tightly to cell membranes, but do not span them. We present a FRAPP (Fluorescence Recovery After Patterned Photobleaching) study of the dynamics of a bacterial monotopic protein, SQR (sulfide quinone oxidoreductase) from the thermophilic bacteria Aquifex aeolicus, inserted into two different types of lipid bilayers (EggPC: L-α-phosphatidylcholine (Egg, Chicken) and DMPC: 1,2-dimyristoyl-sn-glycero-3-phosphocholine) supported on two different types of support (mica or glass). It sheds light on the behavior of a monotopic protein inside the bilayer. The insertion of SQR is more efficient when the bilayer is in the fluid phase than in the gel phase. We observed diffusion of the protein, with no immobile fraction, and deduced from the diffusion coefficient measurements that the resulting inserted object is the same whatever the incubation conditions, i.e. homogeneous in terms of oligomerization state. As expected, the diffusion coefficient of the SQR is smaller in the gel phase than in the fluid phase. In the supported lipid bilayer, the diffusion coefficient of the SQR is smaller than the diffusion coefficient of phospholipids in both gel and fluid phase. SQR shows a diffusion behavior different from the transmembrane protein α-hemolysin, and consistent with its monotopic character. Preliminary experiments in the presence of the substrate of SQR, DecylUbiquinone, an analogue of quinone, component of transmembrane electrons transport systems of eukaryotic and prokaryotic organisms, have been carried out. Finally, we studied the behavior of SQR, in terms of insertion and diffusion, in bilayers formed with lipids from Aquifex aeolicus. All the conclusions that we have found in the biomimetic systems applied to the biological system.
Insights
This study investigated the dynamics of a bacterial monotopic protein, sulfide quinone oxidoreductase (SQR), within lipid bilayers. SQR
Area of Science:
- Membrane biophysics
- Protein dynamics
- Biochemistry
Background:
- Monotopic proteins are membrane-associated but do not traverse the lipid bilayer.
- Understanding their behavior is crucial for elucidating cellular processes.
- Sulfide quinone oxidoreductase (SQR) is a bacterial monotopic protein involved in electron transport.
Purpose of the Study:
- To investigate the insertion and diffusion dynamics of the bacterial monotopic protein SQR.
- To compare SQR behavior in different lipid bilayer compositions and phases.
- To assess SQR's behavior in biomimetic systems and relate it to its biological function.
Main Methods:
- Utilized Fluorescence Recovery After Patterned Photobleaching (FRAPP) to study protein dynamics.
- Employed supported lipid bilayers on mica and glass substrates.
- Investigated SQR insertion and diffusion in various lipid environments, including those mimicking Aquifex aeolicus.
Main Results:
- SQR insertion efficiency is higher in fluid lipid bilayers compared to gel phases.
- Observed homogeneous diffusion of SQR with no immobile fraction across conditions.
- SQR diffusion coefficients are lower in the gel phase and within the lipid bilayer compared to phospholipids.
Conclusions:
- SQR exhibits distinct diffusion behavior consistent with its monotopic nature, differing from transmembrane proteins.
- Lipid bilayer phase (fluid vs. gel) significantly impacts SQR insertion and diffusion.
- Findings in biomimetic systems are applicable to understanding SQR's behavior in its native biological context.
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