Expression signature based on TP53 target genes doesn't predict response to TP53-MDM2 inhibitor in wild type TP53

Dmitriy Sonkin1

  • 1Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, United States.

Elife
|October 23, 2015
PubMed

Insights

A 13-gene signature intended to predict response to TP53-MDM2 inhibitors in TP53 wild type tumors failed validation. Reanalysis revealed TP53 alterations in 23% of supposed wild-type tumors, and the signature did not predict inhibitor response.

Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • TP53-MDM2 inhibitors are investigated for TP53 wild-type (WT) tumors.
  • Patient selection for these therapies remains a challenge as not all TP53 WT tumors respond.
  • A 13-gene mRNA expression signature was developed to predict response in TP53 WT tumors.

Purpose of the Study:

  • To validate the predictive capability of a 13-gene mRNA expression signature for TP53-MDM2 inhibitor response.
  • To re-evaluate TP53 mutational status in cell lines used for signature validation.

Main Methods:

  • Reanalysis of TP53 status in a validation dataset of cancer cell lines.
  • Assessment of the 13-gene signature's ability to predict response to TP53-MDM2 inhibitors in TP53 WT cell lines.

Main Results:

  • TP53 inactivating alterations were detected in 23% of cell lines initially classified as TP53 WT.
  • The 13-gene signature did not accurately predict response to TP53-MDM2 inhibitors in the remaining TP53 WT cell lines.

Conclusions:

  • The 13-gene mRNA expression signature is not a reliable predictor of TP53-MDM2 inhibitor response in TP53 WT tumors.
  • Accurate TP53 status determination is critical for patient stratification in targeted cancer therapy.
  • Further research is needed to identify reliable biomarkers for predicting response to TP53-MDM2 inhibitors.

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