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Expression signature based on TP53 target genes doesn't predict response to TP53-MDM2 inhibitor in wild type TP53
1Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, United States.
Abstract:
A number of TP53-MDM2 inhibitors are currently under investigation as therapeutic agents in a variety of clinical trials in patients with TP53 wild type tumors. Not all wild type TP53 tumors are sensitive to such inhibitors. In an attempt to improve selection of patients with TP53 wild type tumors, an mRNA expression signature based on 13 TP53 transcriptional target genes was recently developed (Jeay et al. 2015). Careful reanalysis of TP53 status in the study validation data set of cancer cell lines considered to be TP53 wild type detected TP53 inactivating alterations in 23% of cell lines. The subsequent reanalysis of the remaining TP53 wild type cell lines clearly demonstrated that unfortunately the 13-gene signature cannot predict response to TP53-MDM2 inhibitor in TP53 wild type tumors.
Insights
A 13-gene signature intended to predict response to TP53-MDM2 inhibitors in TP53 wild type tumors failed validation. Reanalysis revealed TP53 alterations in 23% of supposed wild-type tumors, and the signature did not predict inhibitor response.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- TP53-MDM2 inhibitors are investigated for TP53 wild-type (WT) tumors.
- Patient selection for these therapies remains a challenge as not all TP53 WT tumors respond.
- A 13-gene mRNA expression signature was developed to predict response in TP53 WT tumors.
Purpose of the Study:
- To validate the predictive capability of a 13-gene mRNA expression signature for TP53-MDM2 inhibitor response.
- To re-evaluate TP53 mutational status in cell lines used for signature validation.
Main Methods:
- Reanalysis of TP53 status in a validation dataset of cancer cell lines.
- Assessment of the 13-gene signature's ability to predict response to TP53-MDM2 inhibitors in TP53 WT cell lines.
Main Results:
- TP53 inactivating alterations were detected in 23% of cell lines initially classified as TP53 WT.
- The 13-gene signature did not accurately predict response to TP53-MDM2 inhibitors in the remaining TP53 WT cell lines.
Conclusions:
- The 13-gene mRNA expression signature is not a reliable predictor of TP53-MDM2 inhibitor response in TP53 WT tumors.
- Accurate TP53 status determination is critical for patient stratification in targeted cancer therapy.
- Further research is needed to identify reliable biomarkers for predicting response to TP53-MDM2 inhibitors.
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