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Updated: Mar 31, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
Diversification of DnaA dependency for DNA replication in cyanobacterial evolution
Ryudo Ohbayashi1,2, Satoru Watanabe1, Shigeki Ehira3
1Department of Bioscience, Tokyo University of Agriculture, Tokyo, Japan.
DNA replication regulation is vital. Some cyanobacteria, like Synechocystis and Anabaena, have evolved DnaA-independent DNA replication mechanisms, suggesting this occurred before symbiosis.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- DNA replication initiation is crucial for cell viability and is typically regulated by the DnaA protein in prokaryotes.
- The absence of the dnaA gene in plastids and some symbiotic bacteria suggests the existence of DnaA-independent replication mechanisms, but their evolutionary origin remains unclear.
Purpose of the Study:
- To investigate the variability in DnaA dependency for DNA replication among different cyanobacterial species.
- To explore the implications of DnaA absence on DNA replication and cell viability in cyanobacteria.
Main Methods:
- Gene deletion experiments were performed on Synechococcus elongatus PCC 7942 to remove the dnaA gene.
- DNA replication sites and cell viability were analyzed in wild-type and dnaA disruptant strains of various cyanobacteria, including Synechocystis sp. PCC 6803 and Anabaena sp. PCC 7120.
Main Results:
- Deletion of the dnaA gene in Synechococcus elongatus PCC 7942 resulted in a shift of DNA replication initiation site from oriC due to episomal plasmid integration.
- dnaA disruptants of Synechococcus elongatus PCC 7942 exhibited higher viability during the stationary phase compared to wild-type cells.
- DNA replication and cell growth were unaffected by dnaA deletion in Synechocystis sp. PCC 6803 and Anabaena sp. PCC 7120.
Conclusions:
- Functional dependency on DnaA for DNA replication has been lost in certain nonsymbiotic cyanobacterial lineages.
- Cyanobacteria likely acquired DnaA-independent replication mechanisms prior to symbiosis, with an ancestral cyanobacterium potentially serving as the primary endosymbiont for plastid formation.
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