Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Microbe-Plant Interactions01:09

Microbe-Plant Interactions

54
Microbe-plant interactions represent a dynamic spectrum of associations shaped by intricate chemical signaling. These interactions can be neutral, beneficial, or detrimental, and profoundly influence plant physiology, growth, and ecosystem function. The plant microbiome, comprising bacteria, fungi, archaea, protists, and viruses, plays a pivotal role in mediating these effects through surface colonization, internal colonization, or systemic symbiosis.Mutualistic associations, particularly with...
54
The Roles of Bacteria and Fungi in Plant Nutrition02:11

The Roles of Bacteria and Fungi in Plant Nutrition

48.9K
Plants have the impressive ability to create their own food through photosynthesis. However, plants often require assistance from organisms in the soil to acquire the nutrients they need to function correctly. Both bacteria and fungi have evolved symbiotic relationships with plants that help the species to thrive in a wide variety of environments.
48.9K
Introduction to the Human Microbiota01:22

Introduction to the Human Microbiota

68
Microorganisms colonize various regions of the human body, including the mouth, nasal passages, throat, stomach, intestines, urogenital tract, and skin. The total number of microbial cells is estimated to range from 10¹³ to 10¹⁴—comparable to, or exceeding, the number of human somatic cells. This host–microbiome relationship has led to the conceptualization of humans as supraorganisms, wherein microbial communities perform vital roles in development, immunity,...
68
Soil Microbial Ecology01:29

Soil Microbial Ecology

43
Soil microbial ecology is defined by highly diverse, spatially structured communities that drive nutrient cycling, organic matter turnover, and overall ecosystem stability. Although a gram of soil can contain thousands of bacterial and archaeal taxa, the ecological processes they mediate are even more crucial for sustaining terrestrial life.Microhabitats and NichesSoil is a heterogeneous mixture of minerals, organic matter, water, and air. Microbes inhabit distinct microhabitats formed by...
43
Microbial Interactions: Cooperation01:26

Microbial Interactions: Cooperation

37
Microbial cooperation involves beneficial interactions in which different species work together for individual or mutual advantage. These interactions can profoundly influence ecological dynamics and evolutionary processes, and they are essential to many pathogenic and symbiotic relationships.Nematode–Bacteria CooperationA striking example is the relationship between the Gram-negative bacterium Xenorhabdus nematophila and the parasitic nematode Steinernema carpocapsae. Juvenile nematodes...
37

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Shifts in the Rhizosphere Bacterial Community and Improved Essential Oil Yield and Quality in Chamomilla recutita L. Plant Through Cyanobacterial Inoculation.

Microbial ecology·2026
Same author

From "synthetic" to defined microbial communities for clearer terminology.

Nature communications·2026
Same author

Diversity and selected functional traits of microbiota associated with traditional dried plant foods from South African informal markets.

FEMS microbes·2026
Same author

Microbial diversity creates a global firewall against pathogens in soil.

Cell host & microbe·2026
Same author

Nano-selenium coordinates plant-microbiome redox for sustainable crops.

Trends in plant science·2026
Same author

Multiple origins of the apple seed microbiome: disentangling sexual and asexual transmission pathways.

Environmental microbiome·2026
Same journal

A sugar flow model predicts cell dynamics, weight and quality of tomato at varying sink-source ratios and temperatures.

Journal of experimental botany·2026
Same journal

Crosstalks between plant proteostasis and chromatin remodeling machineries.

Journal of experimental botany·2026
Same journal

Novel Imaging Approaches for Visualising Root-Mycorrhizal Fungal Interactions.

Journal of experimental botany·2026
Same journal

The ga3ox1b mutation reveals the crosstalk between gibberellin and other phytohormones in controlling the growth and development of female flowers in Cucurbita pepo.

Journal of experimental botany·2026
Same journal

Increased grain weight conferred by GW2 mutations in wheat does not translate into yield gains in multi-year field trials of near-isogenic lines.

Journal of experimental botany·2026
Same journal

Serendipita indica promotes rice phosphorus uptake by plasma membrane H+-ATPase OsA1-stimulated root hair growth.

Journal of experimental botany·2026
See all related articles

Related Experiment Video

Updated: Mar 30, 2026

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
10:31

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments

Published on: July 24, 2018

57.4K

The plant microbiome explored: implications for experimental botany.

Gabriele Berg1, Daria Rybakova2, Martin Grube3

  • 1Graz University of Technology, Institute of Environmental Biotechnology, 8010 Graz, Austria Austrian Centre of Industrial Biotechnology (ACIB GmbH), 8010 Graz, Austria.

Journal of Experimental Botany
|November 9, 2015
PubMed
Summary
This summary is machine-generated.

Plants are metaorganisms, with microbes outnumbering plant cells and influencing growth, health, and stress resistance. Understanding plant microbiomes reveals intricate interactions crucial for plant biology and breeding strategies.

Keywords:
Endosphereholobiontmicrobiomephyllosphereplant-microbe interactionrhizosphere.

More Related Videos

Ecosystem Fabrication EcoFAB Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
11:57

Ecosystem Fabrication EcoFAB Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions

Published on: April 10, 2018

19.4K
Inoculation Strategies to Infect Plant Roots with Soil-Borne Microorganisms
08:16

Inoculation Strategies to Infect Plant Roots with Soil-Borne Microorganisms

Published on: March 1, 2022

7.6K

Related Experiment Videos

Last Updated: Mar 30, 2026

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
10:31

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments

Published on: July 24, 2018

57.4K
Ecosystem Fabrication EcoFAB Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
11:57

Ecosystem Fabrication EcoFAB Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions

Published on: April 10, 2018

19.4K
Inoculation Strategies to Infect Plant Roots with Soil-Borne Microorganisms
08:16

Inoculation Strategies to Infect Plant Roots with Soil-Borne Microorganisms

Published on: March 1, 2022

7.6K

Area of Science:

  • Plant Science
  • Microbiology
  • Ecology

Background:

  • Plant-associated microbes have a century-long recognized importance for plant growth and health.
  • Recent research highlights the symbiotic relationship and high diversity within plant microbiomes.
  • Plants host diverse microbial communities in the rhizosphere, phyllosphere, and endosphere.

Purpose of the Study:

  • To review current literature on plant microbiome structure and function.
  • To emphasize the paradigm shift in understanding plant-microbe interactions.
  • To highlight the significance of plant microbiomes in experimental botany and breeding.

Main Methods:

  • Literature review of plant microbiome research.
  • Analysis of data revealing microbiome structure and function.
  • Synthesis of findings on microbial interplay, specificity, transmission, and function.

Main Results:

  • Plant microbiomes exhibit high interplay between bacteria, archaea, fungi, and protists.
  • Microbiome specificity extends to the cultivar level, with vertical transmission of core microbiomes.
  • Endophytes and other microbes perform extraordinary and unexpected functions, influencing plant fitness and metabolism.

Conclusions:

  • Plants should be viewed as metaorganisms with interconnected plant and microbial components.
  • The plant microbiome is a critical factor influencing plant health, stress resistance, and overall fitness.
  • Recognizing the plant microbiome is essential for advancing experimental botany and crop breeding strategies.