MiR-106b~25 cluster regulates multidrug resistance in an ABC transporter-independent manner via downregulation of EP300
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Updated: Mar 30, 2026

Pooled shRNA Library Screening to Identify Factors that Modulate a Drug Resistance Phenotype
Published on: June 17, 2022
Yunhui Hu1, Kaiyong Li2, Muhammad Asaduzzaman2
1The Third Department of Breast Cancer, China Tianjin Breast Cancer Prevention, Treatment and Research Center, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center of Cancer, Tianjin 300060, P.R. China.
Abstract:
MicroRNA (miR)-106b~25 cluster regulates bypass of doxorubicin and γ-radiation induced senescence by downregulation of the E-cadherin transcriptional activator EP300. We asked whether upregulation of miR-106~25 cluster generates cells with a truly multidrug resistant (MDR) phenotype and whether this is due to upregulation of the ATP-binding cassette (ABC) transporter P-glycoprotein. We used minimally transformed mammary epithelial breast cancer cells (MTMECs) in which the miR-106b~25 cluster was experimentally upregulated by lentiviral transfection or in which hairpins targeting either EP300 or E-cadherin mRNAs have been expressed with lentiviruses. We find that overexpression of miR-106b~25 cluster led to the generation of MDR MTMECs (resistant to etoposide, colchicine and paclitaxel). Paclitaxel resistance was also studied after experimental downregulation of EP300 or E-cadherin. However none of these cells overexpressed P-glycoprotein or where able to efflux a fluorescent derivative of paclitaxel, making this phenotype drug-transporter independent. Paclitaxel treatment in MTMECs led to an increase in early apoptotic cells (Annexin V-positive), activation of caspase-9 and increase in the proportion of cells at the G2/M phase of the cell cycle. However, MTMEC overexpressing miR-106b~25 cluster, or with EP300 or E-cadherin downregulated, showed less activation of apoptosis, caspase-9 and caspase-3/-7 activities. Thus, miR-106b~25 cluster controls transporter-independent MDR by apoptosis evasion via downregulation of EP300.
Insights
The miR-106b~25 cluster promotes multidrug resistance (MDR) in breast cancer cells by helping them evade apoptosis, independent of drug transporters. This occurs through downregulating EP300, a key transcriptional activator.
Area of Science:
- Oncology
- Molecular Biology
- Gene Regulation
Background:
- MicroRNA (miR)-106b~25 cluster is implicated in regulating cellular responses to chemotherapy.
- EP300, an E-cadherin transcriptional activator, is a known target of the miR-106b~25 cluster.
- Multidrug resistance (MDR) in cancer is a significant clinical challenge.
Purpose of the Study:
- To investigate if upregulation of the miR-106b~25 cluster induces a multidrug resistant (MDR) phenotype.
- To determine if this MDR phenotype is mediated by P-glycoprotein or other ATP-binding cassette (ABC) transporters.
- To elucidate the role of EP300 and E-cadherin downregulation in MDR.
Main Methods:
- Experimental upregulation of the miR-106b~25 cluster in minimally transformed mammary epithelial breast cancer cells (MTMECs) using lentiviral transfection.
- Expression of hairpins targeting EP300 or E-cadherin mRNAs via lentiviruses.
- Assessment of drug resistance (etoposide, colchicine, paclitaxel), P-glycoprotein expression, drug efflux, apoptosis markers (Annexin V), caspase activation, and cell cycle progression.
Main Results:
- Overexpression of the miR-106b~25 cluster generated MDR MTMECs resistant to etoposide, colchicine, and paclitaxel.
- The MDR phenotype was drug-transporter independent, as P-glycoprotein was not overexpressed, and paclitaxel efflux was not enhanced.
- MTMECs with upregulated miR-106b~25 cluster or downregulated EP300/E-cadherin exhibited reduced apoptosis activation and caspase activity.
Conclusions:
- The miR-106b~25 cluster confers transporter-independent MDR by promoting apoptosis evasion.
- Downregulation of EP300 by the miR-106b~25 cluster is a key mechanism driving this MDR phenotype.
- Targeting the miR-106b~25 cluster or its downstream effectors may offer novel therapeutic strategies for overcoming MDR in breast cancer.
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