Newborn Screening for Cystic Fibrosis in California
Martin Kharrazi1, Juan Yang2, Tracey Bishop2
1California Department of Public Health, Richmond, California; and marty.kharrazi@cdph.ca.gov.
Insights
California
Area of Science:
- Genetics and Genomics
- Public Health
- Pediatrics
Background:
- Newborn screening programs are crucial for early detection of genetic disorders.
- Cystic Fibrosis (CF) is a serious genetic disorder requiring timely diagnosis and management.
- California implemented a newborn screening program for CF to improve early identification.
Purpose of the Study:
- To evaluate the methods and performance of California's newborn screening program for Cystic Fibrosis (CF) over its first five years.
- To assess the effectiveness of a three-step screening model in identifying CF cases.
- To report on the prevalence and mutation spectrum of CF in a diverse newborn population.
Main Methods:
- A three-step screening process was employed for 2,573,293 newborns from July 2007 to June 2012.
- Step 1: Immunoreactive trypsinogen (IRT) measurement in dried blood spots.
- Step 2: Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) mutation analysis for elevated IRT levels.
- Step 3: DNA sequencing for specimens with one identified CFTR mutation.
Main Results:
- The program detected 345 CF cases, 533 CFTR-related metabolic syndrome cases, and 1617 carriers.
- CF prevalence was 1 in 6899 births, with 28 missed CF cases.
- Program sensitivity was 92% and positive predictive value was 34%, identifying 78 novel CFTR variants.
Conclusions:
- The implemented three-step newborn screening model demonstrated high detection rates for CF in a diverse population.
- The program achieved low false-positive rates, facilitating efficient diagnostic evaluations.
- Early identification through this screening approach supports timely intervention for infants with CF.
Objectives:
This article describes the methods used and the program performance results for the first 5 years of newborn screening for cystic fibrosis (CF) in California.
Methods:
From July 16, 2007, to June 30, 2012, a total of 2,573,293 newborns were screened for CF by using a 3-step model: (1) measuring immunoreactive trypsinogen in all dried blood spot specimens; (2) testing 28 to 40 selected cystic fibrosis transmembrane conductance regulator (CFTR) mutations in specimens with immunoreactive trypsinogen values ≥62 ng/mL (top 1.6%); and (3) performing DNA sequencing on specimens found to have only 1 mutation in step 2. Infants with ≥2 mutations/variants were referred to CF care centers for diagnostic evaluation and follow-up. Infants with 1 mutation were considered carriers and their parents offered telephone genetic counseling.
Results:
Overall, 345 CF cases, 533 CFTR-related metabolic syndrome cases, and 1617 carriers were detected; 28 cases of CF were missed. Of the 345 CF cases, 20 (5.8%) infants were initially assessed as having CFTR-related metabolic syndrome, and their CF diagnosis occurred after age 6 months (median follow-up: 4.5 years). Program sensitivity was 92%, and the positive predictive value was 34%. CF prevalence was 1 in 6899 births. A total of 303 CFTR mutations were identified, including 78 novel variants. The median age at referral to a CF care center was 34 days (18 and 37 days for step 2 and 3 screening test-positive infants, respectively).
Conclusions:
The 3-step model had high detection and low false-positive levels in this diverse population.
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