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Updated: Mar 30, 2026

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Published on: April 16, 2021
Atypical Renal Cysts: A Morphologic, Immunohistochemical, and Molecular Study
Andres Matoso1, Ying-Bei Chen, Vishal Rao
1Departments of *Pathology∥Urology¶Oncology, Johns Hopkins Hospital, Baltimore, MD†Department of Pathology, Rhode Island Hospital and Brown University, Providence, RI‡Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY§Department of Pathology, Indiana University, Indianapolis, IN.
Atypical renal cysts show diverse morphology and immunoprofiles, some resembling renal cell carcinoma. Genetic alterations like trisomy 7/17 suggest they may be precursors, but these lesions should not be diagnosed as carcinoma.
Area of Science:
- Uropathology
- Renal Pathology
- Oncology
Background:
- Standardized nomenclature is lacking for complex renal cysts with multiple cell layers or papillary projections.
- Atypical renal cysts can present as complex lesions or secondary findings in patients with renal masses or chronic kidney disease.
Purpose of the Study:
- To characterize the morphology, immunophenotype, and genetic alterations of atypical renal cysts.
- To determine if these cysts represent precursors to renal cell carcinoma.
Main Methods:
- Retrieved 29 cases of atypical renal cysts from surgical pathology files.
- Performed immunohistochemistry for CK7, AMACR, CAIX, and CD10.
- Conducted fluorescence in situ hybridization for trisomy 7, 17, and 3p deletion.
Main Results:
- Cysts were classified into clear cell, eosinophilic stratified, and eosinophilic papillary types.
- Clear cell cases showed CK7 and CAIX positivity, resembling clear cell papillary renal cell carcinoma.
- Eosinophilic cases showed CK7 positivity with variable staining for AMACR, CD10, or CAIX, aligning with papillary renal cell carcinoma.
- Trisomy 17 (6 cases) and trisomy 7 (4 cases) were the most common genetic alterations; one case had 3p deletion.
- Follow-up in 23 patients showed 20 alive with no evidence of disease, indicating a generally benign clinical course.
Conclusions:
- Atypical renal cysts exhibit heterogeneous morphology and immunoprofiles, with some mimicking established renal tumors.
- The presence of genetic alterations (trisomy 7/17, 3p deletion) suggests a potential precursor role in some cases.
- Based on current data, these lesions should not be diagnosed as carcinoma, though further study is warranted.
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