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Shift-and-invert parallel spectral transformation eigensolver: Massively parallel performance for density-functional

Murat Keçeli1, Hong Zhang2, Peter Zapol3

  • 1Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois, 60439.

Journal of Computational Chemistry
|November 19, 2015
PubMed
Summary
This summary is machine-generated.

Shift-and-invert parallel spectral transformations (SIPs) efficiently solve large sparse eigenvalue problems on parallel computers. This method demonstrates exceptional scalability for materials science simulations, enabling rapid analysis of complex structures.

Keywords:
generalized eigenvalue problemsemi-empirical methodssparse matricesspectrum slicingtight-binding DFT

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Area of Science:

  • Computational Physics and Chemistry
  • Materials Science
  • High-Performance Computing

Background:

  • Solving large sparse eigenvalue problems is computationally intensive, crucial for electronic structure calculations in materials science.
  • Existing methods often struggle with scalability on massively parallel architectures.
  • Density-Functional Based Tight-Binding (DFTB) requires efficient diagonalization of large matrices.

Purpose of the Study:

  • To develop and demonstrate the Shift-and-invert parallel spectral transformations (SIPs) for solving sparse eigenvalue problems.
  • To showcase the parallel scalability and robustness of SIPs on massively parallel systems.
  • To apply SIPs to real-world materials science problems, specifically DFTB calculations.

Main Methods:

  • Implementation of Shift-and-invert parallel spectral transformations (SIPs) on massively parallel architectures.
  • Diagonalization of Hamiltonian and overlap matrices for various carbon nanotube and diamond crystal structures.
  • Analysis of weak and strong scaling performance, and comparison with other computational methods.
  • Investigation of matrix ordering techniques to optimize factorization cost.
  • Development of a parallel density matrix assembly from distributed eigenvectors.

Main Results:

  • SIPs demonstrated exceptional parallel scalability and robustness for large-scale eigenvalue problems.
  • Efficient computation of hundreds of thousands of eigenvalues and eigenfunctions for multi-thousand atom systems (e.g., 128,000 atoms) in seconds.
  • Successful parallel implementation of density matrix assembly, crucial for iterative electronic structure calculations.

Conclusions:

  • SIPs provide a powerful and scalable computational approach for tackling large sparse eigenvalue problems in materials science.
  • The method's performance on massively parallel systems, like Blue Gene/Q, enables unprecedented simulation sizes.
  • SIPs offer a significant advancement for electronic structure calculations using methods like DFTB.