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Updated: Mar 30, 2026

A Complete Pipeline for Isolating and Sequencing MicroRNAs, and Analyzing Them Using Open Source Tools
Published on: August 21, 2019
Bioinformatic tools for microRNA dissection
Most Mauluda Akhtar1, Luigina Micolucci2, Md Soriful Islam3
1Laboratory of Experimental Pathology, Department of Clinical and Molecular Sciences, Università Politecnica delle Marche, Ancona 60100, Italy Computational Pathology Unit, Department of Clinical and Molecular Sciences, Università Politecnica delle Marche, Ancona 60100, Italy mauluda82@gmail.com.
MicroRNAs (miRNAs) are key regulators of gene expression involved in development and disease. This study reviews 129 bioinformatics tools to aid researchers in selecting appropriate resources for miRNA analysis.
Area of Science:
- Molecular Biology
- Bioinformatics
Background:
- MicroRNAs (miRNAs) are small, non-coding RNA molecules regulating gene expression post-transcriptionally.
- They influence crucial cellular pathways, including development and carcinogenesis.
- MiRNAs are implicated in human diseases, especially cancer, serving as potential biomarkers.
Purpose of the Study:
- To review and analyze bioinformatics tools for microRNA research.
- To assist researchers in selecting suitable tools for diverse miRNA-related studies.
Main Methods:
- Systematic analysis of 129 microRNA bioinformatics tools.
- Categorization of tools based on their application in miRNA research.
Main Results:
- A comprehensive overview of available miRNA bioinformatics tools is presented.
- The analysis aims to guide researchers in tool selection for specific needs.
Conclusions:
- Effective management of the growing volume of miRNA data requires appropriate bioinformatics tools.
- This review provides a valuable resource for researchers navigating the landscape of miRNA analysis tools.
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