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Updated: Mar 30, 2026

Uracil-DNA Glycosylase Assay by Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry Analysis
Published on: April 22, 2022
Benchmarking the Electron Affinity of Uracil.
Jiande Gu1, Yaoming Xie2, Henry F Schaefer2
1Drug Design & Discovery Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, CAS , Shanghai 201203, People's Republic of China.
Electron attachment to uracil, a DNA/RNA base, was studied. The Weizmann Bruecker doubles composite method determined a positive adiabatic electron affinity (AEA) of 0.024 ± 0.013 eV for uracil.
Area of Science:
- Quantum chemistry
- Computational physics
- Biomolecular science
Background:
- Electron attachment to nucleobases is crucial for understanding DNA/RNA damage.
- Accurate theoretical prediction of electron affinity is challenging.
Purpose of the Study:
- To accurately determine the adiabatic electron affinity (AEA) of uracil.
- To benchmark high-level computational methods for electron attachment studies on nucleobases.
Main Methods:
- Weizmann Bruecker doubles composite (W1BD) method with large basis sets (augh-cc-pVQZ+2df).
- Comparison with other high-level methods like CASPT2 and G4 theory.
- Evaluation of Density Functional Theory (DFT) methods, including M06-2X.
Main Results:
- The W1BD method predicts a positive AEA for uracil.
- The most reliable AEA value for uracil is 0.024 ± 0.013 eV.
- Hartree-Fock and MP2 methods significantly underestimate the AEA, while DFT methods like M06-2X show promise.
Conclusions:
- The W1BD method provides accurate predictions for electron attachment to uracil.
- M06-2X is a promising DFT method for studying electron-DNA/RNA interactions.
- Standard methods like Hartree-Fock and MP2 are unsuitable for this type of study.
Related Concept Videos
Electron Affinity
Degree of Unsaturation
The degree of unsaturation for hydrocarbons is U = (2C + 2 − H) / 2, where C is the number of carbon atoms and H is the number of hydrogen atoms.
Acidity of 1-Alkynes
The acidic strength of hydrocarbons follows the order: Alkynes > Alkenes > Alkanes. The strength of an acid is commonly expressed in units of pKa — the lower the pKa, the stronger the acid. Among the hydrocarbons, terminal alkynes have lower pKa values and are, therefore, more acidic. For example, the pKa values for ethane, ethene, and acetylene are 51, 44, and 25, respectively, as shown here.
Basicity of Heterocyclic Aromatic Amines
Basicity of Aromatic Amines
Nuclear Binding Energy

