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Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
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Self-Trained Supervised Segmentation of Subcortical Brain Structures Using Multispectral Magnetic Resonance Images.

Michele Larobina1, Loredana Murino2, Amedeo Cervo3

  • 1Istituto di Biostrutture e Bioimmagini, CNR, Via Tommaso De Amicis 95, 80145 Napoli, Italy.

Biomed Research International
|November 20, 2015
PubMed
Summary

This study demonstrates a new automated method for training supervised learning models to segment subcortical brain structures in MRI scans. This approach eliminates the need for manual operator intervention, improving efficiency in neuroimaging analysis.

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Area of Science:

  • Neuroimaging
  • Machine Learning
  • Medical Image Analysis

Background:

  • Supervised classification methods for brain structure segmentation require extensive manual training data.
  • Operator intervention for training data selection limits the widespread adoption of these methods.

Purpose of the Study:

  • To investigate the feasibility of automatically training supervised methods for segmenting subcortical brain structures.
  • To evaluate atlas-guided training for k-nearest neighbor (kNN) and principal component discriminant analysis (PCDA) classifiers.

Main Methods:

  • Automated training data selection using probabilistic atlas registration.
  • Utilized voxel intensities and spatial coordinates for kNN and PCDA classifiers.
  • Evaluated on 20 multispectral magnetic resonance imaging datasets.

Main Results:

  • Atlas-guided training effectively creates representative and reliable datasets automatically.
  • Achieved successful segmentation of caudate, thalamus, pallidum, and putamen.
  • Demonstrated the potential for fully automated supervised segmentation of brain images.

Conclusions:

  • Automated atlas-guided training enables supervised methods for brain MRI segmentation without user interaction.
  • This approach enhances the feasibility and efficiency of neuroimaging analysis.
  • Paves the way for wider application of automated segmentation techniques.