Related Experiment Video
Updated: Mar 30, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
From Atoms to Fullerene: Stochastic Surface Walking Solution for Automated Structure Prediction of Complex Material
Xiao-Jie Zhang1, Cheng Shang1, Zhi-Pan Liu1
1Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Key Laboratory of Computational Physical Science (Ministry of Education), Fudan University , Shanghai 200433, China.
Abstract:
It is of general concern whether the automated structure prediction of unknown material without recourse to any knowledge from experiment is ever possible considering the daunting complexity of potential energy surface (PES) of material. Here we demonstrate that the stochastic surface walking (SSW) method can be a general and promising solution to this ultimate goal, which is applied to assemble carbon fullerenes containing up to 100 atoms (including 60, 70, 76, 78, 80, 84, 90, 96, and 100 atoms) from randomly distributed atoms, a long-standing challenge in global optimization. Combining the SSW method with a parallel replica exchange algorithm, we can locate the global minima (GM) of these large fullerenes efficiently without being trapped in numerous energy-nearly degenerate isomers. Detailed analyses on the SSW trajectories allow us to rationalize how and why the SSW method is able to explore the highly complex PES, which highlights the abilities of SSW method for surmounting the high barrier and the preference of SSW trajectories to the low energy pathways. The work demonstrates that the parallel SSW method is a practical tool for predicting unknown materials.
More Related Videos
09:17Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
13:58Probing C84-embedded Si Substrate Using Scanning Probe Microscopy and Molecular Dynamics
Published on: September 28, 2016