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Reaction Path Following with Sparse Interpolation.

James Nance1, Elena Jakubikova1, C T Kelley1

  • 1Department of Mathematics and ‡Department of Chemsitry, North Carolina State University , Raleigh, North Carolina, United States.

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|November 21, 2015
PubMed
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This study introduces a novel computational method for simulating molecular reaction pathways. The approach uses sparse grids to efficiently map reaction paths on reduced dimensions, making complex simulations feasible.

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Area of Science:

  • Computational Chemistry
  • Theoretical Chemistry
  • Chemical Dynamics

Background:

  • Calculating potential energy surfaces for N-atom molecules involves optimizing 3N-6 coordinates, which is computationally intensive.
  • Following reaction pathways across all molecular coordinates is infeasible for large molecules due to high dimensionality.

Purpose of the Study:

  • To develop a computationally efficient method for simulating molecular reaction pathways.
  • To enable the study of reaction dynamics in high-dimensional systems by reducing the number of active coordinates.

Main Methods:

  • Implementing a method to isolate 'd' molecular coordinates (d < 3N-6) for reaction path following.
  • Utilizing Smolyak's sparse grid interpolation algorithm to approximate d-dimensional potential energy surfaces.
  • Comparing the efficiency of sparse grids against dense grids for computational accuracy and resource management.

Main Results:

  • Sparse grids significantly improve the storage and computation time to accuracy ratio compared to dense grids.
  • The developed technique allows for increased dimensionality 'd' in molecular reaction path simulations.
  • Evaluating the interpolant is less computationally expensive than direct energy function evaluation.

Conclusions:

  • The proposed method offers a computationally efficient approach for simulating reaction paths on potential energy surfaces.
  • This technique is applicable to both ground and excited state potential energy surfaces.
  • Demonstrated feasibility through simulation of 2-butene isomerization with varying degrees of freedom.