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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Synthetic lethal targeting of oncogenic transcription factors in acute leukemia by PARP inhibitors
Maria Teresa Esposito1, Lu Zhao1, Tsz Kan Fung1
1Leukemia and Stem Cell Biology Group, Department of Haematological Medicine, Division of Cancer Studies, King's College London, London, UK.
Abstract:
Acute myeloid leukemia (AML) is mostly driven by oncogenic transcription factors, which have been classically viewed as intractable targets using small-molecule inhibitor approaches. Here we demonstrate that AML driven by repressive transcription factors, including AML1-ETO (encoded by the fusion oncogene RUNX1-RUNX1T1) and PML-RARα fusion oncoproteins (encoded by PML-RARA) are extremely sensitive to poly (ADP-ribose) polymerase (PARP) inhibition, in part owing to their suppressed expression of key homologous recombination (HR)-associated genes and their compromised DNA-damage response (DDR). In contrast, leukemia driven by mixed-lineage leukemia (MLL, encoded by KMT2A) fusions with dominant transactivation ability is proficient in DDR and insensitive to PARP inhibition. Intriguingly, genetic or pharmacological inhibition of an MLL downstream target, HOXA9, which activates expression of various HR-associated genes, impairs DDR and sensitizes MLL leukemia to PARP inhibitors (PARPis). Conversely, HOXA9 overexpression confers PARPi resistance to AML1-ETO and PML-RARα transformed cells. Together, these studies describe a potential utility of PARPi-induced synthetic lethality for leukemia treatment and reveal a novel molecular mechanism governing PARPi sensitivity in AML.
Insights
Acute myeloid leukemia (AML) treatments may be improved by targeting poly (ADP-ribose) polymerase (PARP) inhibitors. This approach exploits synthetic lethality in certain AML subtypes by targeting DNA-damage response pathways.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Acute myeloid leukemia (AML) is often driven by transcription factors, which are difficult to target with small molecules.
- Repressive transcription factors in AML present a unique therapeutic vulnerability.
Purpose of the Study:
- To investigate the sensitivity of different AML subtypes to poly (ADP-ribose) polymerase (PARP) inhibitors.
- To elucidate the molecular mechanisms underlying PARP inhibitor (PARPi) sensitivity and resistance in AML.
Main Methods:
- Assessing the DNA-damage response (DDR) and homologous recombination (HR) gene expression in AML cells.
- Utilizing genetic and pharmacological inhibition/overexpression of HOXA9.
- Evaluating the effects of PARP inhibition on AML cell lines with different oncogenic drivers.
Main Results:
- AMLs driven by repressive transcription factors (AML1-ETO, PML-RARα) are sensitive to PARPi due to compromised DDR.
- AMLs driven by MLL fusions are DDR-proficient and PARPi-insensitive.
- Inhibition of MLL downstream target HOXA9 sensitizes MLL leukemia to PARPi, while HOXA9 overexpression confers PARPi resistance to other AML subtypes.
Conclusions:
- PARP inhibitors show potential for treating specific AML subtypes through synthetic lethality.
- HOXA9 acts as a key regulator of PARPi sensitivity in AML by modulating DDR and HR gene expression.
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