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Published on: July 24, 2016
A novel gemycircularvirus in an unexplained case of child encephalitis
Chenglin Zhou1, Shibing Zhang2, Qin Gong3
1Department of Laboratory Medicine, Jiangsu Taizhou People's Hospital, Taizhou, Jiangsu, 225300, China. clzhoutaizhou@126.com.
Background:
Recently, a diverse group of viruses with circular, replication initiator protein(Rep) encoding, single stranded DNA (CRESS-DNA) genomes, were discovered from wide range of eukaryotic organisms ranging from mammals to fungi. Gemycircularvirus belongs to a distinct group of CRESS-DNA genomes and is classified under the genus name of Gemycircularvirus.
Findings:
Here, a novel gemycircularvirus named GeTz1 from cerebrospinal fluid sample of a child with unexplainable encephalitis was characterized. The novel gemycircularvirus encodes two major proteins, including a capsid protein (Cap) and a replication-associated protein (Rep). Phylogenetic analysis based on the amino acid sequence of Rep indicated that GeTz1 clusters with one gemycircularvirus discovered from bird (KF371633), sharing 46.6 % amino acid sequence identity with each other.
Conclusion:
A novel gemycircularvirus was discovered from cerebrospinal fluid sample of a child with unexplainable encephalitis. Further studies, such as testing human sera for specific antibodies, should be performed to investigate whether gemycircularvirus infects human and is associated with encephalitis.
Insights
A novel gemycircularvirus, GeTz1, was found in a child with encephalitis. This discovery highlights the need to investigate gemycircularvirus infections in humans and their potential link to neurological conditions.
Area of Science:
- Virology
- Genomics
- Infectious Diseases
Background:
- Circular, replication initiator protein (Rep) encoding, single-stranded DNA (CRESS-DNA) viruses are found across diverse eukaryotic organisms.
- Gemycircularvirus represents a distinct group within CRESS-DNA viruses.
Purpose of the Study:
- To characterize a novel gemycircularvirus identified in a human cerebrospinal fluid sample.
- To investigate the potential role of gemycircularviruses in unexplained encephalitis.
Main Methods:
- Whole genome sequencing and characterization of the novel virus.
- Phylogenetic analysis of viral proteins (Rep and Cap).
Main Results:
- A novel gemycircularvirus, designated GeTz1, was identified from the cerebrospinal fluid of a child with encephalitis.
- GeTz1 encodes two main proteins: a capsid protein (Cap) and a replication-associated protein (Rep).
- Phylogenetic analysis showed GeTz1 clusters with a known avian gemycircularvirus, sharing 46.6% amino acid identity in the Rep protein.
Conclusions:
- A novel gemycircularvirus was discovered in a human encephalitis case.
- Further research is warranted to determine if gemycircularviruses infect humans and are associated with encephalitis.
- Investigating human sera for specific antibodies against gemycircularviruses is recommended.
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