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Inselect: Automating the Digitization of Natural History Collections.

Lawrence N Hudson1, Vladimir Blagoderov1, Alice Heaton1

  • 1Department of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom.

Plos One
|November 25, 2015
PubMed
Summary
This summary is machine-generated.

Natural history collections are being digitized using automated methods. Inselect software speeds up specimen imaging and data capture for mass digitization projects, enhancing scientific research accessibility.

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Area of Science:

  • Biodiversity Informatics
  • Digital Curation
  • Museum Science

Background:

  • Natural history collections are vital for scientific research but face challenges in accessing and utilizing their vast data.
  • Digitization efforts are crucial for preserving specimens and making them accessible for global research.
  • Mass digitization requires efficient, automated solutions for handling millions of specimens.

Purpose of the Study:

  • To introduce Inselect, a novel software suite for semi-automated processing of specimen images.
  • To enhance the speed and efficiency of natural history specimen digitization workflows.
  • To support data capture and metadata enrichment during the digitization process.

Main Methods:

  • Development of a modular, cross-platform, open-source software suite named Inselect.
  • Integration of image visualization algorithms for automatic specimen recognition.
  • Implementation of workflows for post-processing tasks like barcode reading and label transcription.

Main Results:

  • Inselect provides a user-friendly desktop application and command-line tools for batch processing.
  • The software effectively automates specimen recognition and facilitates data capture.
  • Demonstrated potential to significantly increase the rate of specimen digitization.

Conclusions:

  • Inselect addresses a critical need for efficient tools in natural history digitization.
  • The software empowers organizations to accelerate the digitization of millions of specimens.
  • Improved access to digitized collections will foster broader scientific research and discovery.