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Published on: May 10, 2016
A Solvent-Free Coarse Grain Model for Crystalline and Amorphous Cellulose Fibrils
Goundla Srinivas1, Xiaolin Cheng1, Jeremy C Smith1
1UT/ORNL Center for Molecular Biophysics, Oak Ridge National Laboratory , 1 Bethel Valley Road, Oak Ridge, Tennessee 37831, United States.
A new coarse-grained (CG) model allows molecular dynamics (MD) simulations of cellulose structure and dynamics. This approach accurately captures cellulose crystallinity for biofuel development.
Area of Science:
- Biomass Science
- Computational Chemistry
- Materials Science
Background:
- Understanding cellulose structure and dynamics is crucial for developing cellulosic biofuels.
- Bridging length and time scales in simulations is essential for accurate biomass modeling.
Purpose of the Study:
- To develop a coarse-grained (CG) model for molecular dynamics (MD) simulations of cellulose.
- To enable simulations of cellulose structure and dynamics across extended length and time scales.
Main Methods:
- Developed a single bead per monomer CG model using distribution functions from atomistic MD simulations.
- Validated the model against crystalline cellulose structures, achieving stability over 1 μs without constraints.
- Extended the CG model to amorphous cellulose by targeting atomistic simulations of individual cellulose chains.
Main Results:
- The CG model accurately reproduces structural features of crystalline cellulose.
- The CG crystalline fibril remained stable over extended simulation times (>1 μs).
- Developed CG force fields capable of generating fibril structures with varying degrees of crystallinity.
Conclusions:
- The developed CG model offers an accurate, constraint-free method for simulating cellulose with diverse crystallinity.
- This approach is suitable for integration into large-scale models of lignocellulosic biomass.
- Facilitates advancements in cellulosic biofuel research through improved biomass simulation capabilities.
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