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Simple and Robust in vivo and in vitro Approach for Studying Virus Assembly
Published on: March 1, 2012
Correct Assembly of the Bacteriophage T5 Procapsid Requires Both the Maturation Protease and the Portal Complex
Alexis Huet1, Robert L Duda2, Roger W Hendrix2
1Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA; Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Abstract:
The 90-nm-diameter capsid of coliphage T5 is organized with T=13 icosahedral geometry and encloses a double-stranded DNA genome that measures 121kbp. Its assembly follows a path similar to that of phage HK97 but yielding a larger structure that includes 775 subunits of the major head protein, 12 subunits of the portal protein and 120 subunits of the decoration protein. As for phage HK97, T5 encodes the scaffold function as an N-terminal extension (∆-domain) to the major head protein that is cleaved by the maturation protease after assembly of the initial prohead I form and prior to DNA packaging and capsid expansion. Although the major head protein alone is sufficient to assemble capsid-like particles, the yield is poor and includes many deformed structures. Here we explore the role of both the portal and the protease in capsid assembly by generating constructs that include the major head protein and a combination of protease (wild type or an inactive mutant) and portal proteins and overexpressing them in Escherichia coli. Our results show that the inactive protease mutant acts to trigger assembly of the major head protein, probably through binding to the ∆-domain, while the portal protein regulates assembly into the correct T=13 geometry. A cryo-electron microscopy reconstruction of prohead I including inactivated protease reveals density projecting from the prohead interior surface toward its center that is compatible with the ∆-domain, as well as additional internal density that we assign as the inactivated protease. These results reveal complexity in T5 beyond that of the HK97 system.
Insights
Coliphage T5 capsid assembly involves a major head protein, portal, and protease. The inactive protease triggers assembly, while the portal protein ensures correct T=13 geometry, revealing T5
Area of Science:
- Virology
- Structural Biology
- Molecular Biology
Background:
- Coliphage T5 possesses a 90-nm icosahedral capsid (T=13) enclosing a 121kbp double-stranded DNA genome.
- Capsid assembly shares similarities with phage HK97, utilizing a major head protein with a scaffold (∆-domain) cleaved by a maturation protease.
- The major head protein alone yields poor-quality capsid-like particles, indicating the necessity of other components.
Purpose of the Study:
- To investigate the roles of the portal protein and maturation protease in coliphage T5 capsid assembly.
- To elucidate the mechanism by which these components influence the formation of the T=13 icosahedral structure.
Main Methods:
- Generation and overexpression of constructs containing the major head protein with wild-type or inactive protease and portal proteins in Escherichia coli.
- Cryo-electron microscopy reconstruction of prohead I particles.
- Analysis of protein interactions and structural organization.
Main Results:
- An inactive protease mutant was found to trigger the assembly of the major head protein, likely via binding to the ∆-domain.
- The portal protein was identified as a key regulator, ensuring the correct T=13 icosahedral geometry.
- Cryo-EM revealed density consistent with the ∆-domain and the inactivated protease within prohead I particles.
Conclusions:
- Coliphage T5 capsid assembly is more complex than previously understood, involving intricate regulation by portal and protease components.
- The findings highlight specific roles for the protease in initiating assembly and the portal protein in achieving the correct geometric organization.
- This study provides new insights into the structural mechanisms governing bacteriophage capsid formation.
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