Additive and Classical Drude Polarizable Force Fields for Linear and Cyclic Ethers.
Igor Vorobyov1, Victor M Anisimov1, Shannon Greene1
1Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892.
New force field parameters for ethers were developed, improving simulations of molecules in condensed phases. These parameters are consistent with CHARMM additive and Drude polarizable models, enhancing molecular modeling accuracy.
Area of Science:
- Computational Chemistry
- Molecular Modeling
- Physical Chemistry
Background:
- Accurate molecular simulations require reliable force fields.
- Existing force fields may not fully capture the behavior of ethers.
- Ethers are important in biological and chemical systems.
Purpose of the Study:
- To develop empirical force field parameters for linear and cyclic ethers.
- To ensure consistency with CHARMM additive and Drude polarizable models.
- To enable accurate condensed-phase simulations of ethers.
Main Methods:
- Optimization of aliphatic parameters using alkanes.
- Development of nonbond parameters for oxygen atoms.
- Validation against gas- and condensed-phase properties.
- Inclusion of anisotropic electrostatics for polarizable models.
Main Results:
- Satisfactory agreement with target data for cyclohexane.
- Additional optimization required for cyclopentane due to ring strain.
- Transferable parameters developed for ether classes.
- Good agreement with pure solvent and aqueous solvation properties.
Conclusions:
- The developed force field parameters accurately represent ethers in condensed phases.
- Parameters are transferable to various ether molecules and test systems.
- This work provides a foundation for future force field development in biomolecular simulations.
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