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Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Phosphorylation of RAF Kinase Dimers Drives Conformational Changes that Facilitate Transactivation
Pablo G Jambrina1, Nora Rauch2, Ruth Pilkington2
1Department of Chemistry, King's College London, London, SE1 1DB, UK.
Abstract:
RAF kinases are key players in the MAPK signaling pathway and are important targets for personalized cancer therapy. RAF dimerization is part of the physiological activation mechanism, together with phosphorylation, and is known to convey resistance to RAF inhibitors. Herein, molecular dynamics simulations are used to show that phosphorylation of a key N-terminal acidic (NtA) motif facilitates RAF dimerization by introducing several interprotomer salt bridges between the αC-helix and charged residues upstream of the NtA motif. Additionally, we show that the R-spine of RAF interacts with a conserved Trp residue in the vicinity of the NtA motif, connecting the active sites of two protomers and thereby modulating the cooperative interactions in the RAF dimer. Our findings provide a first structure-based mechanism for the auto-transactivation of RAF and could be generally applicable to other kinases, opening new pathways for overcoming dimerization-related drug resistance.
Insights
Phosphorylation of RAF kinases promotes dimerization by forming salt bridges, enhancing RAF inhibitor resistance. This study reveals a structure-based mechanism for RAF auto-transactivation, offering new strategies against drug resistance.
Area of Science:
- Molecular biology
- Biochemistry
- Structural biology
Background:
- RAF kinases are crucial in the MAPK pathway and are targets for cancer therapy.
- RAF dimerization contributes to physiological activation and drug resistance.
- Understanding RAF activation mechanisms is key for developing effective cancer treatments.
Purpose of the Study:
- To elucidate the structural mechanism by which RAF dimerization occurs.
- To investigate the role of phosphorylation in facilitating RAF dimerization.
- To provide insights into overcoming drug resistance in RAF-targeted therapies.
Main Methods:
- Utilized molecular dynamics simulations.
- Analyzed interprotomer salt bridge formation.
- Examined interactions between the R-spine, a conserved Trp residue, and the N-terminal acidic (NtA) motif.
Main Results:
- Phosphorylation of the NtA motif facilitates RAF dimerization via interprotomer salt bridges.
- The R-spine interacts with a conserved Trp residue near the NtA motif, linking active sites.
- A structure-based mechanism for RAF auto-transactivation is proposed.
Conclusions:
- This study provides the first structure-based mechanism for RAF auto-transactivation.
- The findings illuminate how phosphorylation drives RAF dimerization and modulates activity.
- The proposed mechanism may be applicable to other kinases, aiding in overcoming drug resistance.
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