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Updated: Mar 29, 2026

Demonstrating a Multi-drug Resistant Mycobacterium tuberculosis Amplification Microarray
Published on: April 25, 2014
Diagnosis of pediatric pulmonary tuberculosis with special reference to polymerase chain reaction based nucleic acid
Shreshtha Tiwari1, Gita Nataraj2, Swapna Kanade2
1Department of Microbiology, Seth GSMC & KEM Hospital, Parel, Mumbai 400012, India; AIIMS Bhopal, India.
Insights
Polymerase chain reaction (PCR) offers superior detection of pediatric pulmonary tuberculosis (TB) compared to traditional methods. This molecular diagnostic tool demonstrates higher accuracy and correlation with clinical findings for diagnosing TB in children.
Area of Science:
- Medical Diagnostics
- Microbiology
- Pediatric Infectious Diseases
Background:
- Pediatric pulmonary tuberculosis (PPTB) diagnosis presents challenges due to paucibacillary nature and sample collection difficulties.
- Traditional diagnostic methods like microscopy and culture have limitations in sensitivity and specificity for PPTB.
Purpose of the Study:
- To evaluate the diagnostic utility and accuracy of polymerase chain reaction (PCR) for identifying pediatric pulmonary tuberculosis (PPTB).
- To compare the performance of PCR against conventional methods (microscopy and culture) and clinical assessment in pediatric TB diagnosis.
Main Methods:
- A prospective cross-sectional study involving 100 children under 14 years with suspected PPTB.
- Collection of sputum or gastric lavage samples for direct smear, Lowenstein Jensen (LJ) culture, and single-tube nested PCR targeting the IS6110 sequence of Mycobacterium tuberculosis (MTB).
Main Results:
- PCR demonstrated high sensitivity (93.55%) and specificity (92.75%) when compared to culture.
- PCR showed a higher correlation with clinical diagnosis and treatment response compared to microscopy and culture.
- Positive Predictive Value (PPV) and Negative Predictive Value (NPV) for PCR were 85.29% and 96.97% respectively, against culture.
Conclusions:
- PCR-based nucleic acid amplification tests offer an improved case detection rate for PPTB over microscopy and culture.
- Molecular platforms like PCR are recommended as the preferred diagnostic test for pediatric pulmonary tuberculosis.
- PCR's superior correlation with clinical diagnosis underscores its value in managing pediatric TB cases.
Objective:
To determine the utility of polymerase chain reaction (PCR) for diagnosing pediatric pulmonary tuberculosis (PPTB).
Method:
A prospective cross-sectional study was carried out on 100 children less than 14 years of age, with strong clinical suspicion and radiological evidence suggestive of pulmonary tuberculosis (TB). Sputum samples/gastric lavage were collected. Direct smears and culture on Lowenstein Jensen (LJ) media were performed. DNA extraction and amplification was performed using Genei™ Amplification Reagent set for Mycobacterium tuberculosis (MTB) (by Genei, Bangalore, India). This test is based on the principle of single-tube nested PCR which amplifies the repetitive insertion sequence IS6110.
Results:
When compared with culture, sensitivity and specificity of PCR was 93.55% and 92.75%, respectively. The PPV was 85.29% and the NPV was 96.97%. When intention to treat (ITT) was used as the standard, sensitivity, specificity, PPV and NPV of PCR was 47.88%, 93.1%, 94.4%, and 42.19%, respectively, and that of culture was 40.85%, 100%, 100% and 40.85%, respectively. Against response to treatment (RTT), PCR demonstrated sensitivity, specificity, PPV and NPV of 50.9%, 93.1%, 93.33% and 50%, respectively, and for culture it was 43.64%, 100%, 100% and 48.33%, respectively.
Conclusion/Recommendation:
The present study reinforces better case detection rate with PCR-based nucleic acid amplification test as compared with microscopy and culture in pediatric pulmonary TB. PCR showed a higher correlation with clinical diagnosis as compared with microscopy and solid culture. Hence, a molecular platform should be the test of choice for detecting PPTB.
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