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Updated: Mar 28, 2026

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
Published on: June 24, 2013
Correlative cryo-fluorescence and cryo-scanning electron microscopy as a straightforward tool to study host-pathogen
Martin Strnad1,2, Jana Elsterová1,2,3, Jana Schrenková1,2
1Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, České Budějovice CZ-37005, Czech Republic.
Abstract:
Correlative light and electron microscopy is an imaging technique that enables identification and targeting of fluorescently tagged structures with subsequent imaging at near-to-nanometer resolution. We established a novel correlative cryo-fluorescence microscopy and cryo-scanning electron microscopy workflow, which enables imaging of the studied object of interest very close to its natural state, devoid of artifacts caused for instance by slow chemical fixation. This system was tested by investigating the interaction of the zoonotic bacterium Borrelia burgdorferi with two mammalian cell lines of neural origin in order to broaden our knowledge about the cell-association mechanisms that precedes the entry of the bacteria into the cell. This method appears to be an unprecedentedly fast (<3 hours), straightforward, and reliable solution to study the finer details of pathogen-host cell interactions and provides important insights into the complex and dynamic relationship between a pathogen and a host.
Insights
We developed a rapid cryo-fluorescence and cryo-scanning electron microscopy workflow to study pathogen-host interactions. This technique visualizes bacterial cell association with neural cells near their natural state, offering new insights into infection mechanisms.
Area of Science:
- Microscopy
- Cell Biology
- Infectious Diseases
Background:
- Correlative light and electron microscopy (CLEM) allows high-resolution imaging of fluorescently tagged structures.
- Conventional fixation methods can introduce artifacts, hindering the study of biological processes in near-native states.
- Understanding pathogen-host interactions is crucial for developing effective treatments.
Purpose of the Study:
- To establish a novel correlative cryo-fluorescence microscopy and cryo-scanning electron microscopy (cryo-CLEM) workflow.
- To investigate the early cell-association mechanisms of Borrelia burgdorferi with mammalian neural cell lines.
- To provide a rapid and reliable method for studying pathogen-host interactions at high resolution.
Main Methods:
- Development of a correlative cryo-fluorescence microscopy and cryo-scanning electron microscopy workflow.
- Imaging of Borrelia burgdorferi interacting with neural cell lines using the established cryo-CLEM technique.
- Analysis of bacterial cell association and interaction with host cells in a near-native state.
Main Results:
- The novel cryo-CLEM workflow enables imaging of biological samples in a near-native state, minimizing fixation artifacts.
- The method was successfully applied to study the interaction between Borrelia burgdorferi and mammalian neural cell lines.
- The workflow demonstrated high speed (<3 hours), straightforwardness, and reliability in visualizing pathogen-host cell dynamics.
Conclusions:
- The developed cryo-CLEM workflow is an unprecedentedly fast and reliable solution for studying pathogen-host cell interactions.
- This technique provides valuable insights into the finer details of bacterial association with host cells prior to entry.
- The findings advance our understanding of the complex relationship between pathogens and host cells, particularly in the context of zoonotic diseases.
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