Systems Toxicology of Male Reproductive Development: Profiling 774 Chemicals for Molecular Targets and Adverse Outcomes
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Updated: Mar 28, 2026

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation
Published on: June 17, 2015
Maxwell C K Leung1, Jimmy Phuong, Nancy C Baker
1Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee.
Background:
Trends in male reproductive health have been reported for increased rates of testicular germ cell tumors, low semen quality, cryptorchidism, and hypospadias, which have been associated with prenatal environmental chemical exposure based on human and animal studies.
Objective:
In the present study we aimed to identify significant correlations between environmental chemicals, molecular targets, and adverse outcomes across a broad chemical landscape with emphasis on developmental toxicity of the male reproductive system.
Methods:
We used U.S. EPA's animal study database (ToxRefDB) and a comprehensive literature analysis to identify 774 chemicals that have been evaluated for adverse effects on male reproductive parameters, and then used U.S. EPA's in vitro high-throughput screening (HTS) database (ToxCastDB) to profile their bioactivity across approximately 800 molecular and cellular features.
Results:
A phenotypic hierarchy of testicular atrophy, sperm effects, tumors, and malformations, a composite resembling the human testicular dysgenesis syndrome (TDS) hypothesis, was observed in 281 chemicals. A subset of 54 chemicals with male developmental consequences had in vitro bioactivity on molecular targets that could be condensed into 156 gene annotations in a bipartite network.
Conclusion:
Computational modeling of available in vivo and in vitro data for chemicals that produce adverse effects on male reproductive end points revealed a phenotypic hierarchy across animal studies consistent with the human TDS hypothesis. We confirmed the known role of estrogen and androgen signaling pathways in rodent TDS, and importantly, broadened the list of molecular targets to include retinoic acid signaling, vascular remodeling proteins, G-protein coupled receptors (GPCRs), and cytochrome P450s.
Citation:
Leung MC, Phuong J, Baker NC, Sipes NS, Klinefelter GR, Martin MT, McLaurin KW, Setzer RW, Darney SP, Judson RS, Knudsen TB. 2016. Systems toxicology of male reproductive development: profiling 774 chemicals for molecular targets and adverse outcomes. Environ Health Perspect 124:1050-1061; http://dx.doi.org/10.1289/ehp.1510385.
Insights
Environmental chemicals are linked to male reproductive health issues. This study identified 774 chemicals and their molecular targets, revealing a hierarchy of adverse outcomes consistent with the testicular dysgenesis syndrome (TDS) hypothesis.
Area of Science:
- Environmental toxicology
- Reproductive toxicology
- Computational toxicology
Background:
- Male reproductive health issues like testicular cancer and low semen quality are rising.
- Prenatal exposure to environmental chemicals is a suspected cause, supported by human and animal studies.
Purpose of the Study:
- To identify correlations between environmental chemicals, molecular targets, and adverse male reproductive outcomes.
- To investigate the developmental toxicity of the male reproductive system across a wide range of chemicals.
Main Methods:
- Utilized the U.S. EPA's ToxRefDB animal study database and literature analysis to select 774 chemicals.
- Employed U.S. EPA's ToxCastDB high-throughput screening database to profile chemical bioactivity against ~800 molecular and cellular features.
Main Results:
- Observed a phenotypic hierarchy of testicular atrophy, sperm effects, tumors, and malformations in 281 chemicals, aligning with the testicular dysgenesis syndrome (TDS) hypothesis.
- Identified 54 chemicals with male developmental effects, linking them to 156 gene annotations in a network.
Conclusions:
- Computational modeling confirmed a phenotypic hierarchy consistent with the TDS hypothesis.
- Confirmed roles of estrogen and androgen pathways, and identified new targets including retinoic acid signaling, vascular remodeling proteins, GPCRs, and cytochrome P450s.
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