Jove
Visualize
Contact Us

Related Concept Videos

siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

19.0K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
19.0K
Regulated mRNA Transport02:22

Regulated mRNA Transport

7.2K
In eukaryotes, transcription and translation are compartmentalized; an mRNA is first synthesized in the nucleus and then selectively transported to the cytoplasm for protein synthesis. Before transport, a pre-mRNA undergoes several steps of post-transcriptional modifications including splicing, 5' capping, and the addition of a poly-adenine tail. Various proteins bind to the pre-mRNA during these modifications. The mRNA transport takes place with the help of multiple proteins playing...
7.2K
Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

3.5K
Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
3.5K
Directing Proteins to the Rough Endoplasmic Reticulum01:34

Directing Proteins to the Rough Endoplasmic Reticulum

18.3K
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
18.3K
Experimental RNAi02:15

Experimental RNAi

8.3K
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
8.3K
RNA Interference01:23

RNA Interference

28.6K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
28.6K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Lipid surface droplet 2 (LSD2) regulates lipid metabolism and male reproductive physiology in adult Sitotroga cerealella.

Pesticide biochemistry and physiology·2025
Same author

CpG Site-Specific Methylation-Modulated Divergent Expression of <i>PRSS3</i> Transcript Variants Facilitates Nongenetic Intratumor Heterogeneity in Human Hepatocellular Carcinoma.

Frontiers in oncology·2022
Same author

A hybrid time-frequency domain method to predict insertion loss of intake system.

The Journal of the Acoustical Society of America·2020
Same author

Comparative functional genomic analysis of Alzheimer's affected and naturally aging brains.

PeerJ·2020
Same author

miRDRN-miRNA disease regulatory network: a tool for exploring disease and tissue-specific microRNA regulatory networks.

PeerJ·2019
Same author

Transcriptome Analysis Reveals Novel Genes Associated with Cartilage Degeneration in Posttraumatic Osteoarthritis Progression.

Cartilage·2019
Same journal

Modeling and analysis of forward and inverse kinematics for a flexible Stewart platform.

PloS one·2026
Same journal

Barriers and facilitators to healthcare utilization amongst people living with sickle cell disease in the United States: A scoping review.

PloS one·2026
Same journal

Enhancing data completeness in time series: Imputation strategies for missing data using significant periodically correlated components.

PloS one·2026
Same journal

Key targets and mechanisms by which gut microbiota-derived metabolites regulate Alzheimer's disease through the immune - inflammatory pathway: Based on network pharmacology and molecular docking.

PloS one·2026
Same journal

Grid-tied Transformer-less Boost Switched Capacitor Topology (TLBSCT) for PV applications.

PloS one·2026
Same journal

The load-velocity profiles and exercise-specific velocity zones for seven commonly used weightlifting exercises.

PloS one·2026
See all related articles
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: Mar 28, 2026

Analysis of mRNA Nuclear Export Kinetics in Mammalian Cells by Microinjection
11:32

Analysis of mRNA Nuclear Export Kinetics in Mammalian Cells by Microinjection

Published on: December 4, 2010

15.9K

Non-Catalytic RISCs and Kinetics Determine Mammalian siRNA Sub-Cellular Localization.

Fengmin Ji1, Lianyun Liu2, Ya-Hsin Tien3

  • 1Institute of Biological Sciences and Biotechnology, Beijing Jiaotong University, Beijing 100044, China.

Plos One
|December 25, 2015
PubMed
Summary
This summary is machine-generated.

Small interfering RNAs (siRNAs) regulate cell function. New reaction-diffusion models quantitatively describe siRNA localization within cells, explaining complex patterns and aiding RNAi-based strategies.

More Related Videos

Visualization of Endoplasmic Reticulum Localized mRNAs in Mammalian Cells
10:24

Visualization of Endoplasmic Reticulum Localized mRNAs in Mammalian Cells

Published on: December 17, 2012

14.8K
Analysis of Spliceosomal snRNA Localization in Human Hela Cells Using Microinjection
07:35

Analysis of Spliceosomal snRNA Localization in Human Hela Cells Using Microinjection

Published on: August 6, 2019

6.6K

Related Experiment Videos

Last Updated: Mar 28, 2026

Analysis of mRNA Nuclear Export Kinetics in Mammalian Cells by Microinjection
11:32

Analysis of mRNA Nuclear Export Kinetics in Mammalian Cells by Microinjection

Published on: December 4, 2010

15.9K
Visualization of Endoplasmic Reticulum Localized mRNAs in Mammalian Cells
10:24

Visualization of Endoplasmic Reticulum Localized mRNAs in Mammalian Cells

Published on: December 17, 2012

14.8K
Analysis of Spliceosomal snRNA Localization in Human Hela Cells Using Microinjection
07:35

Analysis of Spliceosomal snRNA Localization in Human Hela Cells Using Microinjection

Published on: August 6, 2019

6.6K

Area of Science:

  • Molecular Biology
  • Systems Biology
  • Bioinformatics

Background:

  • Small interfering RNAs (siRNAs) are crucial for gene regulation.
  • The kinetic and spatial aspects of siRNA mechanisms, particularly sub-cellular localization, remain incompletely understood.
  • Existing knowledge focuses on the gene-silencing mechanism but lacks a dynamic, quantitative description.

Purpose of the Study:

  • To develop a kinetic model for siRNA pathways.
  • To provide quantitative temporal and spatial descriptions of siRNA processes in mammalian cells.
  • To explain experimentally observed sub-cellular siRNA localization patterns.

Main Methods:

  • Derivation of reaction-diffusion equations for multiple RNA-induced silencing complex (RISC) pathways.
  • Modeling of siRNA dynamics within mammalian cells.
  • Analysis of sub-cellular localization patterns based on kinetic parameters.

Main Results:

  • The derived model quantitatively describes temporal and spatial siRNA processes.
  • The model successfully explains previously irreconcilable experimental observations of siRNA sub-cellular localization.
  • Sub-cellular siRNA localization is primarily attributed to the non-catalytic RISC-target complex, influenced by interaction selectivity and nuclear membrane permeability.

Conclusions:

  • siRNA sub-cellular localization is governed by the dynamics of the RISC-target complex.
  • The selectivity of RISC-target interactions and nuclear membrane permeability are key factors in localization.
  • The developed kinetic modeling approach can inform the design of RNA interference (RNAi)-based cell regulation strategies.