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Updated: Mar 28, 2026

Chromatin Isolation by RNA Purification ChIRP
Published on: March 25, 2012
Long noncoding RNA-HOTAIR affects chemoresistance by regulating HOXA1 methylation in small cell lung cancer cells
Shun Fang1, Hongyi Gao1,2, Yue Tong1
1Department of Pathology, Zhujiang Hospital, Southern Medical University, Guangzhou, China.
Abstract:
Homeobox (HOX) transcript antisense RNA (HOTAIR), a long intergenic noncoding RNA (lincRNA), has been reported to play an oncogenic role in various cancers including small cell lung cancer (SCLC). However, it is not known whether HOTAIR can modulate chemoresistance in SCLC. The aim of this study is to investigate the roles of HOTAIR in chemoresistance of SCLC and its possible molecular mechanism. Knockdown of HOTAIR was carried out in SCLC multidrug-resistant cell lines (H69AR and H446AR) and the parental cell lines (H69 and H446) to assess its influence on chemoresistance. The results showed that downregulation of HOTAIR increased cell sensitivity to anticancer drugs through increasing cell apoptosis and cell cycle arrest, and suppressed tumor growth in vivo. Moreover, HOXA1 methylation increased in the resistant cells using bisulfite sequencing PCR. Depletion of HOTAIR reduced HOXA1 methylation by decreasing DNMT1 and DNMT3b expression. The interaction between HOTAIR and HOXA1 was validated by RNA immunoprecipitation. Taken together, our study suggested that HOTAIR mediates chemoresistance of SCLC by regulating HOXA1 methylation and could be utilized as a potential target for new adjuvant therapies against chemoresistance.
Insights
Homeobox transcript antisense RNA (HOTAIR) promotes chemoresistance in small cell lung cancer (SCLC) by increasing HOXA1 methylation. Reducing HOTAIR enhances drug sensitivity and may offer new therapeutic strategies for SCLC.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Homeobox (HOX) transcript antisense RNA (HOTAIR), a long intergenic noncoding RNA (lincRNA), is implicated in various cancers.
- Its role in small cell lung cancer (SCLC) chemoresistance remains largely unexplored.
Purpose of the Study:
- To investigate the function of HOTAIR in SCLC chemoresistance.
- To elucidate the underlying molecular mechanisms of HOTAIR-mediated chemoresistance.
Main Methods:
- HOTAIR knockdown in multidrug-resistant and parental SCLC cell lines.
- Assessment of drug sensitivity, apoptosis, and cell cycle progression.
- Analysis of HOXA1 methylation using bisulfite sequencing PCR.
- Evaluation of DNA methyltransferase (DNMT) expression.
- RNA immunoprecipitation to validate HOTAIR-HOXA1 interaction.
- In vivo tumor growth suppression studies.
Main Results:
- Downregulation of HOTAIR sensitized SCLC cells to anticancer drugs, enhanced apoptosis, and induced cell cycle arrest.
- HOTAIR depletion suppressed tumor growth in vivo.
- Resistant SCLC cells exhibited increased HOXA1 methylation.
- HOTAIR knockdown reduced HOXA1 methylation by decreasing DNMT1 and DNMT3b expression.
- Direct interaction between HOTAIR and HOXA1 was confirmed.
Conclusions:
- HOTAIR plays a significant role in mediating chemoresistance in SCLC.
- The mechanism involves HOTAIR regulating HOXA1 methylation via DNMT1 and DNMT3b.
- HOTAIR represents a potential therapeutic target for overcoming chemoresistance in SCLC adjuvant therapies.
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