NDPK-D (NM23-H4)-mediated externalization of cardiolipin enables elimination of depolarized mitochondria by mitophagy

V E Kagan1, J Jiang1, Z Huang1

  • 1Department of Environmental and Occupational Health, Center for Free Radical and Antioxidant Health, University of Pittsburgh, Pittsburgh, PA, USA.

Insights

NDPK-D protein facilitates cardiolipin externalization, a key signal for mitophagy, essential for cellular homeostasis. This discovery uncovers the machinery behind mitochondrial degradation.

Area of Science:

  • Cell Biology
  • Mitochondrial Biology
  • Autophagy Research

Background:

  • Mitophagy is crucial for maintaining cellular health and homeostasis.
  • Cardiolipin (CL) externalization to the outer mitochondrial membrane (OMM) serves as a signal for mitophagy.
  • The molecular machinery responsible for CL translocation remains unidentified.

Purpose of the Study:

  • To identify the protein responsible for cardiolipin translocation during mitophagy.
  • To elucidate the role of NDPK-D in CL externalization and mitophagy.
  • To investigate the connection between mitochondrial dynamics and mitophagy.

Main Methods:

  • Utilized RNAi knockdown to assess the function of NDPK-D in mitophagy.
  • Employed a cardiolipin-binding mutant of NDPK-D to study its activity.
  • Applied in situ proximity ligation assay (PLA) to examine protein interactions.
  • Investigated mitophagy induction using CCCP, rotenone, and 6-hydroxydopamine in various cell lines.

Main Results:

  • NDPK-D (NM23-H4) was identified as a hexameric protein that binds cardiolipin and facilitates its transfer to the OMM.
  • CCCP-induced CL externalization and mitophagy were reduced upon NDPK-D knockdown.
  • A non-CL-binding NDPK-D mutant failed to promote mitophagy.
  • NDPK-D's mitophagy-inducing activity was linked to OPA1, suggesting a role for mitochondrial fission-fusion dynamics.

Conclusions:

  • NDPK-D is a critical component of the CL-translocating machinery required for mitophagy.
  • The study reveals a novel mechanism for regulating mitophagy through CL externalization.
  • Mitochondrial dynamics, involving OPA1, are implicated in the regulation of NDPK-D-mediated mitophagy.

Related Concept Videos

Translocation of Proteins into the Mitochondria01:19

Translocation of Proteins into the Mitochondria

Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
13.7K
Mitochondrial Membranes01:45

Mitochondrial Membranes

A single mitochondrion is a bean-shaped organelle enclosed by a double-membrane system. The outer membrane of mitochondria is smooth and contains many porins - the integral membrane transporters. Porins enable free diffusion of ions and small uncharged molecules through the outer mitochondrial membrane but limit the transport of molecules larger than 5000 Daltons. Further, the outer mitochondrial membrane forms a unique structure called membrane contact sites with other subcellular organelles,...
17.8K
Autophagy01:27

Autophagy

Autophagy is a self-digesting process by which a cell protects itself from threats both within and outside the cell, ranging from abnormal proteins to invading bacteria. In this process, obsolete components of the cell and invading microbes are degraded by hydrolytic enzymes active in an acidic environment of the lysosomal lumen.
An autophagic pathway consists of a series of signaling events activated in response to diverse stress and physiological conditions such as food deprivation,...
6.1K
Porin Insertion in the Outer Mitochondrial Membrane01:12

Porin Insertion in the Outer Mitochondrial Membrane

Porins are beta-barrel proteins translocated to the mitochondrial outer membrane through the TOM complex into the intermembrane space. Porin precursors bind TIM chaperones within the intermembrane space and are guided to the Sorting and Assembly Machinery complex or SAM complex on the outer mitochondrial membrane.
Three models describe the assembly of porins by the SAM complex and their insertion into the outer membrane. Model 1 suggests that porins are assembled outside the SAM channel as the...
5.2K
Mitochondrial Protein Sorting01:39

Mitochondrial Protein Sorting

Mitochondria are double-membrane organelles of the eukaryotes involved in cellular metabolism, signaling, ATP synthesis, and programmed cell death.  Each of these processes requires specific proteins and enzymes that must be correctly sorted to the right mitochondrial subcompartment for the proper functioning of the organelle.
Most of these mitochondrial proteins are encoded by the nucleus and imported to the mitochondria as unfolded or loosely folded precursors. Mitochondrial precursors...
6.0K
The Inner Mitochondrial Membrane01:28

The Inner Mitochondrial Membrane

The inner mitochondrial membrane is the primary site of ATP synthesis. The inner membrane domain that forms a smooth layer adjacent to the outer membrane is called the inner boundary membrane. This domain contains membrane transporters that drive metabolites in and out of the mitochondria.  In contrast, the inner membrane network that invaginates into the matrix space is called the cristae membrane. This domain accounts for principle mitochondrial function as it accommodates the protein...
5.0K