Related Experiment Video
Updated: Jul 12, 2026

07:37
CAPRRESI: Chimera Assembly by Plasmid Recovery and Restriction Enzyme Site Insertion
Published on: June 25, 2017
Ars region TL-DNA on octopine type Ti plasmids
Summary
Researchers identified a specific DNA segment, the ars region, within the T-DNA of octopine Ti plasmids that enables replication in yeast. This discovery aids in understanding plasmid stability and replication mechanisms in Saccharomyces cerevisiae.
Area of Science:
- Molecular Biology
- Genetics
- Microbiology
Background:
- Ti plasmids from Agrobacterium tumefaciens are crucial for plant genetic engineering.
- Understanding the replication origins of these plasmids in yeast is important for developing new tools.
Purpose of the Study:
- To identify and characterize the DNA region responsible for autonomous replication of a T-DNA fragment in yeast.
- To investigate the stability and transformation efficiency of hybrid plasmids in Saccharomyces cerevisiae.
Main Methods:
- Construction of YIp5 hybrid plasmids containing specific T-DNA regions.
- Transformation of Saccharomyces cerevisiae and selection of transformants.
- Rescue of plasmids in Escherichia coli to assess their integrity.
Main Results:
- A specific ars region within the T-DNA conferred replicational ability to YIp5 in yeast.
- Hybrid plasmids achieved high transformation frequencies (10^3-10^4 transformants/µg DNA).
- Transformed yeast exhibited mitotically unstable phenotypes, attributed to low replication efficiency.
Conclusions:
- The identified ars region is essential for autonomous replication of T-DNA in yeast.
- The instability of transformed plasmids highlights the need for further optimization of replication efficiency.
- The ars region was mapped to a noncoding area between specific mRNA coding regions, with a minimal length of approximately 150 bp.
Related Concept Videos
Translesion DNA Polymerases
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
DNA-only Transposons
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
piRNA - Piwi-interacting RNAs
PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
Repressible Operon: trp Operon
The trp operon in Escherichia coli exemplifies a repressible operon. It regulates the synthesis of tryptophan through repressor-mediated transcriptional control and attenuation. This dual regulatory mechanism ensures tryptophan biosynthesis occurs only when needed, conserving cellular resources.Structure of the trp OperonThe trp operon consists of five structural genes (trpE, trpD, trpC, trpB, and trpA) that encode enzymes for tryptophan biosynthesis. These genes are transcribed as a single...
Plasmids
Plasmids are extrachromosomal DNA molecules found in bacteria, archaea, and some eukaryotic microbes like yeast. These small, circular DNA structures typically contain fewer than 30 genes, although some may exist linearly. Plasmids vary in their number within a cell, known as copy number. Single-copy plasmids are present in one copy per cell and multi-copy plasmids are present in multiple copies, reaching over 100 copies per cell.Plasmids usually replicate independently of the chromosomal DNA...
DNA Bacteriophages
Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...

