Related Experiment Video
Updated: Mar 27, 2026

RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1
Kenzui Taniue1, Akiko Kurimoto2, Hironobu Sugimasa1
1Laboratory of Molecular and Genetic Information, Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-0032, Japan;
Abstract:
Many long noncoding RNAs (lncRNAs) are reported to be dysregulated in human cancers and play critical roles in tumor development and progression. Furthermore, it has been reported that many lncRNAs regulate gene expression by recruiting chromatin remodeling complexes to specific genomic loci or by controlling transcriptional or posttranscriptional processes. Here we show that an lncRNA termed UPAT [ubiquitin-like plant homeodomain (PHD) and really interesting new gene (RING) finger domain-containing protein 1 (UHRF1) Protein Associated Transcript] is required for the survival and tumorigenicity of colorectal cancer cells. UPAT interacts with and stabilizes the epigenetic factor UHRF1 by interfering with its β-transducin repeat-containing protein (TrCP)-mediated ubiquitination. Furthermore, we demonstrate that UHRF1 up-regulates Stearoyl-CoA desaturase 1 and Sprouty 4, which are required for the survival of colon tumor cells. Our study provides evidence for an lncRNA that regulates protein ubiquitination and degradation and thereby plays a critical role in the survival and tumorigenicity of tumor cells. Our results suggest that UPAT and UHRF1 may be promising molecular targets for the therapy of colon cancer.
Insights
A novel long noncoding RNA, UPAT, is crucial for colorectal cancer cell survival and tumor growth. UPAT stabilizes the UHRF1 protein, impacting cancer progression and offering potential therapeutic targets.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- Long noncoding RNAs (lncRNAs) are frequently dysregulated in human cancers.
- lncRNAs play roles in tumor development by regulating gene expression.
- Mechanisms include chromatin remodeling and transcriptional/posttranscriptional control.
Purpose of the Study:
- To investigate the role of a specific lncRNA, UPAT, in colorectal cancer.
- To elucidate the molecular mechanisms by which UPAT influences cancer cell survival and tumorigenicity.
Main Methods:
- Identification and characterization of the UPAT lncRNA.
- Analysis of UPAT's interaction with the UHRF1 protein.
- Assessment of UHRF1 ubiquitination and degradation pathways.
- Evaluation of UHRF1-regulated genes (SCD1, SPRY4) in colon tumor cells.
Main Results:
- UPAT is essential for colorectal cancer cell survival and tumorigenicity.
- UPAT stabilizes UHRF1 by inhibiting its ubiquitination and degradation.
- UHRF1 up-regulates Stearoyl-CoA desaturase 1 (SCD1) and Sprouty 4 (SPRY4), which are vital for colon tumor cell survival.
- This study demonstrates a lncRNA's role in regulating protein ubiquitination and degradation.
Conclusions:
- UPAT plays a critical role in colorectal cancer by regulating UHRF1 stability and downstream targets.
- UPAT and UHRF1 represent potential therapeutic targets for colon cancer treatment.
Related Concept Videos
lncRNA - Long Non-coding RNAs
lncRNA - Long Non-coding RNAs
Nonsense-mediated mRNA Decay
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Types of RNA
RNA Performs Diverse...
Types of RNA
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
RNA Stability