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Updated: Mar 27, 2026

Author Spotlight: Visualizing Single-Stranded DNA During DNA Repair for Therapeutic Insights
Published on: December 22, 2023
p53 coordinates base excision repair to prevent genomic instability
Mattia Poletto1, Arnaud J Legrand1, Sally C Fletcher1
1CRUK & MRC Oxford Institute for Radiation Oncology, University of Oxford, Department of Oncology, Old Road Campus Research Building, OX37DQ Oxford, UK.
Abstract:
DNA constantly undergoes chemical modification due to endogenous and exogenous mutagens. The DNA base excision repair (BER) pathway is the frontline mechanism handling the majority of these lesions, and primarily involves a DNA incision and subsequent resealing step. It is imperative that these processes are extremely well-coordinated as unrepaired DNA single strand breaks (SSBs) can be converted to DNA double strand breaks during replication thus triggering genomic instability. However, the mechanism(s) governing the BER process are poorly understood. Here we show that accumulation of unrepaired SSBs triggers a p53/Sp1-dependent downregulation of APE1, the endonuclease responsible for the DNA incision during BER. Importantly, we demonstrate that impaired p53 function, a characteristic of many cancers, leads to a failure of the BER coordination mechanism, overexpression of APE1, accumulation of DNA strand breaks and results in genomic instability. Our data provide evidence for a previously unrecognized mechanism for coordination of BER by p53, and its dysfunction in p53-inactivated cells.
Insights
DNA repair is crucial for genomic stability. This study reveals that the p53 protein coordinates DNA base excision repair (BER) by regulating APE1 endonuclease, preventing genomic instability in healthy cells.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- DNA damage is continuously generated by mutagens.
- The Base Excision Repair (BER) pathway repairs most DNA lesions.
- Unrepaired DNA single-strand breaks (SSBs) can lead to genomic instability.
Purpose of the Study:
- To elucidate the regulatory mechanisms of the BER pathway.
- To investigate the role of p53 in coordinating BER.
- To understand how BER dysfunction contributes to genomic instability.
Main Methods:
- Investigated the impact of unrepaired SSBs on BER components.
- Utilized p53 functional assays and APE1 endonuclease activity measurements.
- Analyzed DNA strand break accumulation and genomic instability markers.
Main Results:
- Accumulation of unrepaired SSBs induces p53/Sp1-dependent downregulation of APE1.
- Impaired p53 function results in APE1 overexpression and increased DNA strand breaks.
- p53 dysfunction leads to genomic instability due to failed BER coordination.
Conclusions:
- p53 plays a critical, previously unrecognized role in coordinating BER.
- Dysfunction of this p53-mediated BER coordination mechanism contributes to genomic instability in p53-inactivated cells, common in cancer.
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