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Updated: Mar 27, 2026

Antimicrobial Peptides Produced by Selective Pressure Incorporation of Non-canonical Amino Acids
Published on: May 4, 2018
A Novel Depsipeptide Produced by Paenibacillus alvei 32 Isolated from a Cystic fibrosis Patient
Romain Chevrot1, Sandrine Didelot2, Larissa Van den Bossche3
1Laboratoire Littoral Environnement et Sociétés, LIENSs, Université de La Rochelle, UMR 7266, CNRS, Avenue Michel Crépeau, 17042, Rochelle Cedex 1, France. romain.chevrot01@univ-lr.fr.
Abstract:
The important viscosity of the respiratory tract mucus of Cystic fibrosis (CF) patients impairs the mucociliary transport system and allows the growth of numerous micro-organisms. Among them, Pseudomonas aeruginosa and Staphylococcus aureus are known to be responsible for pulmonary infections. We imagined that CF microflora could also harbour micro-organisms naturally equipped to compete with these pathogens. A method was developed to recover these antibiotic-producing strains within 20 CF sputum. Using this approach, we have isolated an unusual Gram-positive bacterium identified as Paenibacillus alvei by Api galleries and 16S rRNA gene sequence analysis. This strain has inhibited the growth of P. aeruginosa, S. aureus and Klebsiella pneumoniae, in co-cultures. A liquid mineral medium named MODT50 was designed and optimised for the production and the recovery of the antimicrobial compounds. The supernatant has inhibited the growth of all Gram-positive strains tested, even Methicillin-resistant S. aureus. One antimicrobial compound with a peptide structure (mainly active against S. aureus, Micrococcus luteus, and Pseudomonas stutzeri) has been purified and characterised by liquid chromatography-mass spectrometry. The new active molecule (m/z 786.6) named depsipeptide L possesses a 15-guanidino-3-hydroxypentadecanoic acid side chain (m/z 298) linked on a cyclic part of four amino acids residues (Ser, two Leu/Ile, Arg). This work reports for the first time the production of such a molecule by a P. alvei strain in a mineral medium. The CF lung microflora might represent a valuable source for the discovery of new antimicrobial-producing strains.
Insights
Researchers discovered a new antibiotic-producing bacterium, Paenibacillus alvei, in cystic fibrosis (CF) sputum. This bacterium and its novel depsipeptide L molecule show potent activity against dangerous pathogens like MRSA, offering hope for new antimicrobial therapies.
Area of Science:
- Microbiology
- Pharmacology
- Biochemistry
Background:
- Cystic fibrosis (CF) patients exhibit increased respiratory tract mucus viscosity, impairing mucociliary transport and promoting infections by pathogens like Pseudomonas aeruginosa and Staphylococcus aureus.
- The CF lung microflora may harbor microorganisms with natural antimicrobial properties to combat these pathogens.
Purpose of the Study:
- To isolate and identify antibiotic-producing bacteria from CF sputum.
- To characterize the antimicrobial compounds produced by these isolates.
- To explore the potential of CF microflora as a source for novel antimicrobial discovery.
Main Methods:
- Isolation of antibiotic-producing strains from 20 CF sputum samples.
- Identification of an isolated Gram-positive bacterium as Paenibacillus alvei using API galleries and 16S rRNA gene sequencing.
- Optimization of a mineral medium (MODT50) for antimicrobial compound production.
- Purification and characterization of an antimicrobial compound using liquid chromatography-mass spectrometry.
Main Results:
- Paenibacillus alvei was isolated and demonstrated inhibitory effects against P. aeruginosa, S. aureus, and Klebsiella pneumoniae in co-cultures.
- The optimized medium's supernatant inhibited growth of various Gram-positive strains, including Methicillin-resistant S. aureus (MRSA).
- A novel cyclic peptide molecule, depsipeptide L, was purified and characterized, showing activity against S. aureus, Micrococcus luteus, and Pseudomonas stutzeri.
Conclusions:
- Paenibacillus alvei produces a novel depsipeptide L with significant antimicrobial activity, including against MRSA.
- This study demonstrates the potential of CF lung microflora as a valuable source for discovering new antimicrobial-producing strains and molecules.
- The findings suggest a promising avenue for developing new therapeutic strategies against antibiotic-resistant bacterial infections.
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