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In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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Structure Prediction: New Insights into Decrypting Long Noncoding RNAs.

Kun Yan1, Yasir Arfat2, Dijie Li3

  • 1Key Laboratory for Space Bioscience &amp; Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, 127 Youyi Xilu, Xi'an 710072, China. yan@mail.nwpu.cn.

International Journal of Molecular Sciences
|January 26, 2016
PubMed
Summary
This summary is machine-generated.

Long noncoding RNAs (lncRNAs) are crucial for cellular functions but poorly understood. This review explores RNA structure prediction methods to help researchers investigate lncRNA functions.

Keywords:
functionlncRNAssecondary structurestructure predictiontertiary structure

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Area of Science:

  • Molecular Biology
  • Bioinformatics

Background:

  • Long noncoding RNAs (lncRNAs) are a diverse class of RNA molecules with poorly understood functions.
  • Emerging evidence highlights their roles in critical biological processes like dosage compensation and chromatin regulation.
  • Investigating the broad functional spectrum of lncRNAs within cellular networks presents significant experimental challenges.

Purpose of the Study:

  • To review mainstream computational methods for predicting RNA secondary and tertiary structures.
  • To highlight the utility of RNA structure prediction in understanding lncRNA functions.
  • To provide researchers with an additional approach for lncRNA functional investigation.

Main Methods:

  • Focus on computational approaches for RNA structure prediction.
  • Discussion of secondary structure prediction techniques.
  • Exploration of tertiary structure prediction methodologies.

Main Results:

  • RNA structure prediction offers essential information for lncRNA research.
  • Computational methods enable rapid, large-scale, and in-depth analysis of lncRNAs.
  • Structural versatility is key to RNA function and understanding lncRNAs.

Conclusions:

  • RNA structure prediction is a valuable tool for advancing lncRNA research.
  • This approach facilitates the investigation of lncRNA functions.
  • Further exploration of computational methods will enhance our understanding of lncRNAs.