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Published on: July 8, 2025
Homology modeling and docking studies of ENPP4: a BCG activated tumoricidal macrophage protein
Dongmei Yan1, Weiwei Han2, Zehua Dong3
1Department of Immunology, College of basic Medical sciences, Jilin University, Xinmin Street 126#, Changchun City, Jilin Province, China. dmyan@jlu.edu.cn.
Background:
The 3D structure and functions of ENPP4, a protein expressed on the surface of Bacillus Calmette-Guerin (BCG)-activated macrophages, are unknown. In this study, we analyzed the 3D structure of ENPP4 and determined its tumoricidal effects on MCA207 cells.
Results:
Homology modeling showed that Arg305, Tyr341, Asn291, and Asn295 are important residues in substrate, adenosine triphosphate (ATP), binding. A molecular dynamics study was also carried out to study the stability of ENPP4 (including zinc atoms) as well as its ligand-enzyme complex. BCG increased ENPP4 expression in macrophages, and specific blocking of ENPP4 in BCG-activated macrophages (BAMs) significantly reduced their cytotoxicity against MCA207 cells.
Conclusions:
These results indicate that zinc remains inside the ENPP4 protein, a BCG activated tumoricidal macrophage protein, throughout the simulation. Important information for the design of new inhibitors was obtained.
Insights
Bacillus Calmette-Guerin (BCG) activates macrophages to express ENPP4, a protein crucial for tumor cell killing. Blocking ENPP4 reduces this cancer-fighting ability, suggesting it as a potential therapeutic target.
Area of Science:
- Biochemistry
- Immunology
- Structural Biology
Background:
- The three-dimensional structure and precise functions of ENPP4 remain largely uncharacterized.
- ENPP4 is a protein found on the surface of macrophages activated by Bacillus Calmette-Guerin (BCG).
Purpose of the Study:
- To elucidate the 3D structure of ENPP4.
- To investigate the tumoricidal effects of ENPP4 on MCA207 cells.
- To understand the role of ENPP4 in BCG-activated macrophages.
Main Methods:
- Homology modeling was employed to predict the 3D structure of ENPP4.
- Molecular dynamics simulations were conducted to assess protein and ligand-enzyme complex stability.
- ENPP4 expression levels were analyzed in macrophages.
- Macrophage cytotoxicity assays were performed using specific ENPP4 blocking.
Main Results:
- Key residues (Arg305, Tyr341, Asn291, Asn295) essential for adenosine triphosphate (ATP) binding were identified.
- Molecular dynamics simulations confirmed the stability of ENPP4 and its complex with ligands, with zinc atoms remaining bound.
- BCG stimulation upregulated ENPP4 expression in macrophages.
- Blocking ENPP4 in BCG-activated macrophages significantly diminished their ability to kill MCA207 tumor cells.
Conclusions:
- ENPP4 is a BCG-activated protein involved in macrophage-mediated tumoricidal activity.
- The study provides critical insights into ENPP4's structure and function, aiding in the development of novel inhibitors.
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