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Mutations in TSC1, TSC2, and MTOR Are Associated with Response to Rapalogs in Patients with Metastatic Renal Cell
David J Kwiatkowski1,2,3, Toni K Choueiri1,2,3, André P Fay1,4
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, US.
Purpose:
We examined the hypothesis that mutations in mTOR pathway genes are associated with response to rapalogs in metastatic renal cell carcinoma (mRCC).
Experimental Design:
We studied a cohort of mRCC patients who were treated with mTOR inhibitors with distinct clinical outcomes. Tumor DNA from 79 subjects was successfully analyzed for mutations using targeted next-generation sequencing of 560 cancer genes. Responders were defined as those with partial response (PR) by RECIST v1.0 or stable disease with any tumor shrinkage for 6 months or longer. Nonresponders were defined as those with disease progression during the first 3 months of therapy. Fisher exact test assessed the association between mutation status in mTOR pathway genes and treatment response.
Results:
Mutations in MTOR, TSC1, or TSC2 were more common in responders, 12 (28%) of 43, than nonresponders, 4 (11%) of 36 (P = 0.06). Mutations in TSC1 or TSC2 alone were also more common in responders, 9 (21%), than nonresponders, 2(6%), (P = 0.05). Furthermore, 5 (42%) of 12 subjects with PR had mutations in MTOR, TSC1, or TSC2 compared with 4 (11%) of 36 nonresponders (P = 0.03). Eight additional non-mTOR pathway genes were found to be mutated in at least 4 of 79 tumors (5%); none were associated positively with response.
Conclusions:
In this cohort of mRCC patients, mutations in MTOR, TSC1, or TSC2 were more common in patients who experienced clinical benefit from rapalogs than in those who progressed. However, a substantial fraction of responders (24 of 43, 56%) had no mTOR pathway mutation identified. Clin Cancer Res; 22(10); 2445-52. ©2016 AACRSee related commentary by Voss and Hsieh, p. 2320.
Insights
Mutations in mTOR pathway genes like MTOR, TSC1, or TSC2 were more frequent in metastatic renal cell carcinoma patients who responded to rapalogs. However, many responders lacked these specific mutations.
Area of Science:
- Oncology
- Genetics
- Pharmacology
Background:
- Metastatic renal cell carcinoma (mRCC) is a complex cancer.
- Rapalogs are a class of drugs targeting the mTOR pathway.
- Predicting response to rapalogs in mRCC remains a challenge.
Purpose of the Study:
- To investigate the association between mutations in mTOR pathway genes and patient response to rapalog therapy in mRCC.
- To identify potential genetic biomarkers for predicting rapalog efficacy.
Main Methods:
- Targeted next-generation sequencing of 560 cancer genes was performed on tumor DNA from 79 mRCC patients.
- Patients were categorized as responders or nonresponders based on RECIST criteria and treatment duration.
- Fisher exact test was used to analyze the association between gene mutations and treatment response.
Main Results:
- Mutations in MTOR, TSC1, or TSC2 were more common in responders (28%) compared to nonresponders (11%) (P=0.06).
- Mutations in TSC1 or TSC2 alone showed a significant association with response (21% in responders vs. 6% in nonresponders, P=0.05).
- Partial responders (PR) were more likely to have mTOR pathway mutations (42%) than nonresponders (11%) (P=0.03).
Conclusions:
- Mutations in MTOR, TSC1, or TSC2 are more prevalent in mRCC patients who benefit from rapalogs.
- These mutations may serve as predictive biomarkers for rapalog treatment in mRCC.
- A significant proportion of responders did not have detectable mTOR pathway mutations, suggesting other mechanisms of response.
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