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Comparative transcriptomics and comprehensive marker resource development in mulberry.

Bushra Saeed1, Vinay K Baranwal2, Paramjit Khurana3

  • 1Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India. bushra.saeed1@gmail.com.

BMC Genomics
|February 6, 2016
PubMed
Summary

Researchers sequenced wild mulberry (Morus) transcriptomes to develop molecular markers. This resource aids gene discovery and breeding programs for Morus species improvement.

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Area of Science:

  • Plant genomics
  • Molecular biology
  • Agricultural science

Background:

  • Wild mulberry species (Morus laevigata and Morus serrata) show high potential for breeding programs.
  • Lack of dense molecular markers hinders the realization of this potential.
  • Transcriptome sequencing offers a pathway for marker development.

Purpose of the Study:

  • To sequence and analyze the transcriptomes of Morus laevigata and Morus serrata.
  • To develop a resource of molecular markers for mulberry improvement.
  • To facilitate gene identification and characterization in wild mulberry.

Main Methods:

  • Whole transcriptome sequencing of M. laevigata and M. serrata.
  • Bioinformatic assembly and annotation of generated transcriptomic data.
  • Identification and analysis of molecular variations including SSRs, SNPs, and InDels.

Main Results:

  • Generated 87.0 Mb (M. laevigata) and 80.3 Mb (M. serrata) of transcriptome data.
  • Assembled and annotated 95,181 (M. laevigata) and 85,269 (M. serrata) transcripts.
  • Identified 24,049 Simple Sequence Repeats (SSRs), 1,201,326 Single Nucleotide Polymorphisms (SNPs), and 67,875 Insertion-Deletions (InDels).

Conclusions:

  • The developed transcriptome resource is valuable for gene discovery and characterization in wild mulberry.
  • This resource significantly contributes to ongoing mulberry improvement initiatives.
  • Facilitates marker-assisted breeding for enhanced mulberry varieties.