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Updated: Mar 26, 2026

Quantitative Methods to Study Protein Arginine Methyltransferase 1-9 Activity in Cells
Published on: August 7, 2021
The Arginine Methyltransferase PRMT6 Cooperates with Polycomb Proteins in Regulating HOXA Gene Expression
Claudia Stein1, René Reiner Nötzold1, Stefanie Riedl1
1Institute for Molecular Biology and Tumor Research (IMT), Philipps-University of Marburg, Marburg, Germany.
Abstract:
Protein arginine methyltransferase 6 (PRMT6) catalyses asymmetric dimethylation of histone H3 at arginine 2 (H3R2me2a), which has been shown to impede the deposition of histone H3 lysine 4 trimethylation (H3K4me3) by blocking the binding and activity of the MLL1 complex. Importantly, the genomic occurrence of H3R2me2a has been found to coincide with histone H3 lysine 27 trimethylation (H3K27me3), a repressive histone mark generated by the Polycomb repressive complex 2 (PRC2). Therefore, we investigate here a putative crosstalk between PRMT6- and PRC-mediated repression in a cellular model of neuronal differentiation. We show that PRMT6 and subunits of PRC2 as well as PRC1 are bound to the same regulatory regions of rostral HOXA genes and that they control the differentiation-associated activation of these genes. Furthermore, we find that PRMT6 interacts with subunits of PRC1 and PRC2 and that depletion of PRMT6 results in diminished PRC1/PRC2 and H3K27me3 occupancy and in increased H3K4me3 levels at these target genes. Taken together, our data uncover a novel, additional mechanism of how PRMT6 contributes to gene repression by cooperating with Polycomb proteins.
Insights
Protein arginine methyltransferase 6 (PRMT6) cooperates with Polycomb proteins to repress gene expression. This interaction diminishes repressive histone marks and increases activating marks, revealing a new gene repression mechanism.
Area of Science:
- Epigenetics
- Gene Regulation
- Molecular Biology
Background:
- Protein arginine methyltransferase 6 (PRMT6) catalyzes H3R2me2a, inhibiting H3K4me3 deposition by blocking the MLL1 complex.
- H3R2me2a genomic occurrence coincides with H3K27me3, a repressive mark generated by Polycomb repressive complex 2 (PRC2).
Purpose of the Study:
- Investigate the crosstalk between PRMT6- and PRC-mediated repression during neuronal differentiation.
- Elucidate PRMT6's role in gene repression through cooperation with Polycomb proteins.
Main Methods:
- Utilized a cellular model of neuronal differentiation.
- Examined binding of PRMT6, PRC2, and PRC1 subunits to rostral HOXA gene regulatory regions.
- Assessed the impact of PRMT6 depletion on histone mark occupancy (H3K4me3, H3K27me3) and Polycomb occupancy (PRC1, PRC2).
Main Results:
- PRMT6, PRC1, and PRC2 subunits bind to the same regulatory regions of rostral HOXA genes, controlling their differentiation-associated activation.
- PRMT6 interacts with PRC1 and PRC2 subunits.
- PRMT6 depletion leads to reduced PRC1/PRC2 and H3K27me3 occupancy, alongside increased H3K4me3 levels at target genes.
Conclusions:
- PRMT6 cooperates with Polycomb proteins (PRC1 and PRC2) to repress gene expression.
- This cooperation represents a novel mechanism contributing to PRMT6-mediated gene silencing.
- The findings highlight a new layer of epigenetic regulation involving PRMT6 and Polycomb complexes in controlling gene expression during differentiation.
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