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Updated: Mar 25, 2026

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Oncogenic Gene Fusion FGFR3-TACC3 Is Regulated by Tyrosine Phosphorylation
Katelyn N Nelson1, April N Meyer1, Asma Siari2
1Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California.
Unlabelled:
Fibroblast growth factor receptors (FGFR) are critical for cell proliferation and differentiation. Mutation and/or translocation of FGFRs lead to aberrant signaling that often results in developmental syndromes or cancer growth. As sequencing of human tumors becomes more frequent, so does the detection of FGFR translocations and fusion proteins. The research conducted in this article examines a frequently identified fusion protein between FGFR3 and transforming acidic coiled-coil containing protein 3 (TACC3), frequently identified in glioblastoma, lung cancer, bladder cancer, oral cancer, head and neck squamous cell carcinoma, gallbladder cancer, and cervical cancer. Using titanium dioxide-based phosphopeptide enrichment (TiO2)-liquid chromatography (LC)-high mass accuracy tandem mass spectrometry (MS/MS), it was demonstrated that the fused coiled-coil TACC3 domain results in constitutive phosphorylation of key activating FGFR3 tyrosine residues. The presence of the TACC coiled-coil domain leads to increased and altered levels of FGFR3 activation, fusion protein phosphorylation, MAPK pathway activation, nuclear localization, cellular transformation, and IL3-independent proliferation. Introduction of K508R FGFR3 kinase-dead mutation abrogates these effects, except for nuclear localization which is due solely to the TACC3 domain.
Implications:
These results demonstrate that FGFR3 kinase activity is essential for the oncogenic effects of the FGFR3-TACC3 fusion protein and could serve as a therapeutic target, but that phosphorylated tyrosine residues within the TACC3-derived portion are not critical for activity. Mol Cancer Res; 14(5); 458-69. ©2016 AACR.
Insights
The FGFR3-TACC3 fusion protein drives cancer by constitutively activating FGFR3 signaling. Inhibiting FGFR3 kinase activity is essential for its oncogenic effects, making it a potential therapeutic target.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Fibroblast growth factor receptors (FGFRs) are crucial for cell growth and differentiation.
- FGFR mutations and translocations can lead to cancer and developmental disorders.
- FGFR3-TACC3 fusions are frequently detected in various human cancers.
Purpose of the Study:
- To investigate the functional consequences of FGFR3-TACC3 fusion protein.
- To determine the role of FGFR3 kinase activity in the oncogenic potential of the fusion protein.
- To identify potential therapeutic targets for cancers harboring FGFR3-TACC3 fusions.
Main Methods:
- Utilized titanium dioxide-based phosphopeptide enrichment (TiO2)-liquid chromatography (LC)-high mass accuracy tandem mass spectrometry (MS/MS).
- Analyzed the effects of FGFR3-TACC3 fusion on FGFR3 activation, phosphorylation, and downstream signaling pathways.
- Introduced a kinase-dead K508R FGFR3 mutation to assess its impact on fusion protein activity.
Main Results:
- The TACC3 coiled-coil domain induces constitutive phosphorylation of activating FGFR3 tyrosine residues.
- FGFR3-TACC3 fusion leads to increased FGFR3 activation, MAPK pathway activation, and IL3-independent proliferation.
- FGFR3 kinase activity is essential for the oncogenic effects, while TACC3-derived phosphorylation is not critical.
Conclusions:
- FGFR3 kinase activity is indispensable for the oncogenic functions of the FGFR3-TACC3 fusion protein.
- The FGFR3-TACC3 fusion protein represents a potential therapeutic target in relevant cancers.
- Nuclear localization is mediated solely by the TACC3 domain, independent of FGFR3 kinase activity.
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