Classification of ADAMTS binding sites: The first step toward selective ADAMTS7 inhibitors

Michaela Müller1, Thorsten Kessler2, Heribert Schunkert2

  • 1Institut für Integrative und Experimentelle Genomik, Universität zu Lübeck, Maria-Goeppert-Str. 1, 23562 Lübeck, Germany; DZHK (German Centre for Cardiovascular Research), Partner Site Hamburg/Lübeck/Kiel, Germany; University Heart Center Luebeck, 23562 Lübeck, Germany.

Insights

Researchers identified a potential therapeutic target for coronary artery disease by analyzing the ADAMTS7 protein. This study characterized the ADAMTS7 binding site, paving the way for developing selective inhibitors to treat the disease.

Area of Science:

  • Biochemistry
  • Structural Biology
  • Pharmacology

Background:

  • Genome-wide association studies link ADAMTS7 to coronary artery disease (CAD) risk.
  • ADAMTS7 expression increases with neointima formation in rat carotid arteries.
  • ADAMTS7-deficient mice show reduced neointima formation after vascular injury.

Purpose of the Study:

  • To characterize the metalloproteinase domain and binding site of ADAMTS7.
  • To identify potential regions for selective ADAMTS7 inhibitor development.
  • To establish ADAMTS7 as a therapeutic target for coronary artery disease.

Main Methods:

  • In silico homology modeling of the ADAMTS7 metalloproteinase domain.
  • In silico pharmacophore modeling to analyze the ADAMTS7 binding site.
  • Comparative analysis of ADAMTS7 binding site with other ADAMTS proteins.

Main Results:

  • Structural and sequence differences identified in the ADAMTS7 binding site compared to other ADAMTS proteins.
  • Non-conserved regions in the binding site suggest potential for selective inhibitor design.
  • A pharmacophore model for ADAMTS7 was proposed.

Conclusions:

  • The characterization of the ADAMTS7 binding site is a crucial first step toward developing novel therapeutics for CAD.
  • Targeting ADAMTS7 inhibition offers a potential new strategy for CAD intervention.
  • The proposed pharmacophore can guide the design of selective ADAMTS7 inhibitors.

Related Concept Videos

Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
5.9K
Adrenergic Receptors: ɑ Subtype01:31

Adrenergic Receptors: ɑ Subtype

Adrenoceptors are classified into α and ꞵ classes based on their potencies to catecholamine agonists. α-adrenoceptors show the following order of catecholamine potency:
Adrenaline ≥ Noradrenaline >> Isoprenaline
α-adrenoceptors are further divided into α1 and α2-adrenoceptors.
α1-Adrenoceptors: These receptors are located postsynaptically on the effector organs and cause constriction of smooth muscle mediated by activation of phospholipase...
3.2K
Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
6.9K
Adrenergic Antagonists: Chemistry and Classification of ɑ-Receptor Blockers01:17

Adrenergic Antagonists: Chemistry and Classification of ɑ-Receptor Blockers

Adrenergic antagonists, or sympatholytics, inhibit adrenoceptor activation driven by catecholamines or agonists. Based on their adrenoceptor specificity, adrenergic blockers can be categorized into two primary groups: α-adrenergic blockers (α-blockers) and β-adrenergic blockers (β-blockers). α-blockers interact with α1 and α2 subtypes of α-adrenoceptors.
Nonselective α-blockers: Nonselective α-blockers contain haloalkylamine or imidazoline...
1.8K
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
5.3K
Conserved Binding Sites01:49

Conserved Binding Sites

2.0K