Related Experiment Video
Updated: Mar 25, 2026

08:29
Biomarkers in an Animal Model for Revealing Neural, Hematologic, and Behavioral Correlates of PTSD
Published on: October 10, 2012
16.9K
Unlocking Index Animalium: From paper slips to bytes and bits
Suzanne C Pilsk1, Martin R Kalfatovic1, Joel M Richard1
1Smithsonian Libraries, Washington DC, USA.
Zookeys
|February 16, 2016
Summary
Smithsonian Libraries digitized Charles Davies Sherborn's Index Animalium, transforming a print index into a searchable database. This initiative enhances access to taxonomic literature, connecting researchers to species descriptions for biodiversity research.
Area of Science:
- Library Science
- Biodiversity Informatics
- Taxonomy
Background:
- Smithsonian Libraries (SIL) began digitizing collections in 1996, focusing on rare natural history volumes.
- Initial digitization efforts centered on page imaging, revealing limitations in accessing granular data within texts.
- Traditional library metadata proved insufficient for researchers seeking detailed information within taxonomic literature.
Purpose of the Study:
- To convert Charles Davies Sherborn's Index Animalium from a print index to a digital database and dataset.
- To enhance researchers' ability to connect with and retrieve granular data from taxonomic literature.
- To integrate the Index Animalium database with the Biodiversity Heritage Library (BHL) and taxonomic intelligence tools.
Main Methods:
- Digitization of page images and re-keying of data from Index Animalium.
- Development of a complex database for quality field searching of species names and bibliographies.
- Integration with the Biodiversity Heritage Library (BHL) and exploration of Linked Open Data standards (RDF markup).
Main Results:
- Successful conversion of Index Animalium into a searchable database, overcoming challenges with inconsistent data.
- Establishment of a collaborative project involving partnerships with Thomson Reuters and the Global Names Initiative.
- Development of pathways for seamless researcher access from species names to original digitized descriptions in BHL.
Conclusions:
- Digitizing and restructuring legacy print resources like Index Animalium is crucial for modern biodiversity research.
- Integration of diverse data sources and the adoption of Linked Open Data principles are key to advancing taxonomic informatics.
- Collaborative efforts are essential for creating robust, interconnected resources that facilitate discovery and access to scientific literature.

