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Updated: Mar 25, 2026

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Idarubicin is a broad-spectrum enterovirus replication inhibitor that selectively targets the virus internal
Hsin-Yu Hou1, Wen-Wen Lu2, Kuan-Yin Wu1
1Department of Biotechnology and Laboratory Science in Medicine, National Yang-Ming University, Taipei, Taiwan, ROC.
Insights
Idarubicin, an FDA-approved anticancer drug, shows potent antiviral activity against Enterovirus 71 (EV71) and other enteroviruses by inhibiting viral RNA translation. This discovery offers new therapeutic avenues for treating severe enterovirus infections.
Area of Science:
- Virology
- Molecular Biology
- Drug Discovery
Background:
- Enterovirus 71 (EV71) causes severe neurological diseases in children, with no specific treatments available.
- Idarubicin (IDR), an anthracycline, is currently used to treat certain cancers.
Purpose of the Study:
- To investigate the antiviral potential of Idarubicin (IDR) against Enterovirus 71 (EV71).
- To explore the mechanism of action for IDR's antiviral effects.
Main Methods:
- Cell-based assays to evaluate IDR's protective effects against EV71-induced cytopathic effects and cell death.
- Analysis of viral protein and RNA synthesis, viral proteolysis, and internal ribosomal entry site (IRES)-mediated translation.
- Structure-activity relationship studies and assessment of IDR's binding affinity to EV71 IRES RNA and host factors like hnRNP A1.
Main Results:
- IDR demonstrated significant antiviral potency against EV71 and other enterovirus species.
- IDR inhibited viral protein and RNA synthesis by suppressing EV IRES-mediated translation, independent of cytotoxicity.
- IDR's efficacy correlated with its binding affinity to the EV IRES RNA and its ability to disrupt the binding of hnRNP A1.
Conclusions:
- Idarubicin is identified as a potent inhibitor of EV71 and other enteroviruses.
- IDR selectively targets and inhibits EV IRES-mediated translation, offering a novel mechanism for antiviral therapy.
- This study repurposes an existing anticancer drug, suggesting potential for new antiviral treatments targeting the EV IRES RNA.
Abstract:
Enterovirus 71 (EV71) causes life-threatening diseases with neurological manifestations in young children. However, the treatment of EV71 infections remains an unmet medical need. Idarubicin (IDR) is an anthracycline compound that is used therapeutically for certain types of tumour. In this study, we identified IDR as an EV71 inhibitor, which displayed antiviral potency in the submicromolar range and substantially protected cells from the cytopathic effects and cell death caused by EV71 infections. The antiviral effects extended to several other enterovirus (EV) species, and these effects were independent of cytotoxicity or topoisomerase inhibition. Structure-activity relationship studies indicated the importance of the anthracycline scaffold for anti-EV potency. IDR effectively blocked the synthesis of viral protein and RNA, but not the viral proteolysis processes. Moreover, anthracyclines were demonstrated to suppress EV internal ribosomal entry site (IRES)-mediated translation; conversely, the cellular p53 IRES activity was not sensitive to IDR action. Inhibition of IRES-mediated translation by IDR correlated with the affinity of binding between IDR and the particular IRES. Moreover, IDR impaired binding between the EV71 IRES RNA and hnRNP A1, a known host IRES trans-acting factor. In sum, we have identified a USA FDA-approved anticancer drug with the new indication as a selective EV IRES binder and inhibitor. The finding may also provide leads for the development of novel antiviral therapies directed at the EV IRES RNA.
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