Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate

Ferdos Abid Ali1, Ludovic Renault1,2, Julian Gannon1

  • 1Macromolecular Machines, Clare Hall Laboratory, The Francis Crick Institute, Blanche Lane, South Mimms EN6 3LD, UK.

Nature Communications
|February 19, 2016
PubMed

Insights

The Cdc45-MCM-GINS (CMG) helicase unwinds DNA during replication. New structures reveal how its MCM ATPase motor interacts with single-stranded DNA to drive fork unwinding.

Area of Science:

  • Molecular Biology
  • Structural Biology
  • Biochemistry

Background:

  • The Cdc45-MCM-GINS (CMG) helicase is essential for eukaryotic DNA replication.
  • Its function relies on the MCM ATPase activity for DNA unwinding.
  • Mechanisms of CMG translocation and ATP-driven unwinding are not fully understood.

Purpose of the Study:

  • To elucidate the structural basis of CMG helicase translocation on DNA forks.
  • To investigate how ATP hydrolysis by MCM drives DNA unwinding at the replication fork.

Main Methods:

  • Cryo-electron microscopy (cryo-EM) to determine high-resolution structures of CMG on DNA forks.
  • Single-molecule Förster Resonance Energy Transfer (smFRET) measurements to support structural findings.

Main Results:

  • Two distinct CMG structures on DNA forks were resolved at subnanometre resolution.
  • In one state, the MCM ATPase module contacts single-stranded DNA via specific hairpins.
  • In another state, the MCM motor appears relaxed, with DNA interacting with the N-terminal tier.

Conclusions:

  • A model for replication fork unwinding is proposed, involving concerted action of MCM's N-terminal and AAA+ tiers.
  • CMG translocation likely occurs on single-stranded DNA.
  • These findings provide mechanistic insights into eukaryotic genome duplication.

Related Concept Videos

DNA Helicases00:55

DNA Helicases

DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
24.9K
The Replisome03:01

The Replisome

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
39.5K
The Replisome03:01

The Replisome

11.2K
Replication in Eukaryotes01:29

Replication in Eukaryotes

In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high fidelity before cell division, so there are many proteins that fulfill specialized roles in the replication process. Replication occurs in three phases: initiation, elongation, and termination, and ends with two complete sets of chromosomes in the nucleus.
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...
18.9K
Replication in Eukaryotes02:31

Replication in Eukaryotes

Overview
207.2K
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
6.5K