Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate
Related Experiment Video
Updated: Mar 25, 2026

Author Spotlight: Investigating the Motion Dynamics of the Eukaryotic Replisome Components at the Single-Molecule Level
Published on: July 26, 2024
Ferdos Abid Ali1, Ludovic Renault1,2, Julian Gannon1
1Macromolecular Machines, Clare Hall Laboratory, The Francis Crick Institute, Blanche Lane, South Mimms EN6 3LD, UK.
Abstract:
The Cdc45-MCM-GINS (CMG) helicase unwinds DNA during the elongation step of eukaryotic genome duplication and this process depends on the MCM ATPase function. Whether CMG translocation occurs on single- or double-stranded DNA and how ATP hydrolysis drives DNA unwinding remain open questions. Here we use cryo-electron microscopy to describe two subnanometre resolution structures of the CMG helicase trapped on a DNA fork. In the predominant state, the ring-shaped C-terminal ATPase of MCM is compact and contacts single-stranded DNA, via a set of pre-sensor 1 hairpins that spiral around the translocation substrate. In the second state, the ATPase module is relaxed and apparently substrate free, while DNA intimately contacts the downstream amino-terminal tier of the MCM motor ring. These results, supported by single-molecule FRET measurements, lead us to suggest a replication fork unwinding mechanism whereby the N-terminal and AAA+ tiers of the MCM work in concert to translocate on single-stranded DNA.
Insights
The Cdc45-MCM-GINS (CMG) helicase unwinds DNA during replication. New structures reveal how its MCM ATPase motor interacts with single-stranded DNA to drive fork unwinding.
Area of Science:
- Molecular Biology
- Structural Biology
- Biochemistry
Background:
- The Cdc45-MCM-GINS (CMG) helicase is essential for eukaryotic DNA replication.
- Its function relies on the MCM ATPase activity for DNA unwinding.
- Mechanisms of CMG translocation and ATP-driven unwinding are not fully understood.
Purpose of the Study:
- To elucidate the structural basis of CMG helicase translocation on DNA forks.
- To investigate how ATP hydrolysis by MCM drives DNA unwinding at the replication fork.
Main Methods:
- Cryo-electron microscopy (cryo-EM) to determine high-resolution structures of CMG on DNA forks.
- Single-molecule Förster Resonance Energy Transfer (smFRET) measurements to support structural findings.
Main Results:
- Two distinct CMG structures on DNA forks were resolved at subnanometre resolution.
- In one state, the MCM ATPase module contacts single-stranded DNA via specific hairpins.
- In another state, the MCM motor appears relaxed, with DNA interacting with the N-terminal tier.
Conclusions:
- A model for replication fork unwinding is proposed, involving concerted action of MCM's N-terminal and AAA+ tiers.
- CMG translocation likely occurs on single-stranded DNA.
- These findings provide mechanistic insights into eukaryotic genome duplication.
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