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RNA Next-Generation Sequencing and a Bioinformatics Pipeline to Identify Expressed LINE-1s at the Locus-Specific Level
Published on: May 19, 2019
The Reverse Transcriptase Encoded by LINE-1 Retrotransposons in the Genesis, Progression, and Therapy of Cancer
Ilaria Sciamanna1, Chiara De Luca1, Corrado Spadafora2
1Istituto Superiore di Sanità Rome, Italy.
Abstract:
In higher eukaryotic genomes, Long Interspersed Nuclear Element 1 (LINE-1) retrotransposons represent a large family of repeated genomic elements. They transpose using a reverse transcriptase (RT), which they encode as part of the ORF2p product. RT inhibition in cancer cells, either via RNA interference-dependent silencing of active LINE-1 elements, or using RT inhibitory drugs, reduces cancer cell proliferation, promotes their differentiation and antagonizes tumor progression in animal models. Indeed, the non-nucleoside RT inhibitor efavirenz has recently been tested in a phase II clinical trial with metastatic prostate cancer patients. An in-depth analysis of ORF2p in a mouse model of breast cancer showed ORF2p to be precociously expressed in precancerous lesions and highly abundant in advanced cancer stages, while being barely detectable in normal breast tissue, providing a rationale for the finding that RT-expressing tumors are therapeutically sensitive to RT inhibitors. We summarize mechanistic and gene profiling studies indicating that abundant LINE-1-derived RT can "sequester" RNA substrates for reverse transcription in tumor cells, entailing the formation of RNA:DNA hybrid molecules and impairing the overall production of regulatory miRNAs, with a global impact on the cell transcriptome. Based on these data, LINE-1-ORF2 encoded RT has a tumor-promoting potential that is exerted at an epigenetic level. We propose a model whereby LINE1-RT drives a previously unrecognized global regulatory process, the deregulation of which drives cell transformation and tumorigenesis with possible implications for cancer cell heterogeneity.
Insights
Long Interspersed Nuclear Element 1 (LINE-1) reverse transcriptase (RT) promotes tumor growth by sequestering RNA and impairing microRNA production. Inhibiting LINE-1 RT offers a potential therapeutic strategy for various cancers.
Area of Science:
- Genomics
- Molecular Biology
- Cancer Research
Background:
- Long Interspersed Nuclear Element 1 (LINE-1) retrotransposons are abundant in eukaryotic genomes.
- LINE-1 elements utilize reverse transcriptase (RT) for transposition, encoded within ORF2p.
- RT inhibition has shown promise in reducing cancer proliferation and tumor progression.
Purpose of the Study:
- To investigate the role of LINE-1 encoded RT in cancer development and progression.
- To explore the mechanistic basis for RT's tumor-promoting potential.
- To evaluate LINE-1 RT as a therapeutic target in cancer.
Main Methods:
- Analysis of ORF2p expression in a mouse model of breast cancer.
- Gene profiling studies to assess the impact of LINE-1 RT on cellular transcriptome.
- Mechanistic studies on RNA substrate sequestration and microRNA production.
Main Results:
- ORF2p is precociously expressed in precancerous lesions and highly abundant in advanced cancers.
- LINE-1 RT sequesters RNA substrates, forming RNA:DNA hybrids and reducing regulatory miRNA production.
- RT inhibition demonstrates therapeutic sensitivity in RT-expressing tumors.
Conclusions:
- LINE-1 encoded RT possesses tumor-promoting potential, acting at an epigenetic level.
- Deregulation of LINE-1 RT-driven processes contributes to cell transformation and tumorigenesis.
- Targeting LINE-1 RT may offer novel therapeutic strategies for cancer treatment.
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