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Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Diversity of phage infection types and associated terminology: the problem with 'Lytic or lysogenic'
Zack Hobbs1, Stephen T Abedon2
1EpiBiome, Inc., 329 Oyster Point Blvd, South San Francisco, CA 94080, USA.
Abstract:
Bacteriophages, or phages, are viruses of members of domain Bacteria. These viruses play numerous roles in shaping the diversity of microbial communities, with impact differing depending on what infection strategies specific phages employ. From an applied perspective, these especially are communities containing undesired or pathogenic bacteria that can be modified through phage-mediated bacterial biocontrol, that is, through phage therapy. Here we seek to categorize phages in terms of their infection strategies as well as review or suggest more descriptive, accurate or distinguishing terminology. Categories can be differentiated in terms of (1) whether or not virion release occurs (productive infections versus lysogeny, pseudolysogeny and/or the phage carrier state), (2) the means of virion release (lytic versus chronic release) and (3) the degree to which phages are genetically equipped to display lysogenic cycles (temperate versus non-temperate phages). We address in particular the use or overuse of what can be a somewhat equivocal phrase, 'Lytic or lysogenic', especially when employed as a means of distinguishing among phages types. We suggest that the implied dichotomy is inconsistent with both modern as well as historical understanding of phage biology. We consider, therefore, less ambiguous terminology for distinguishing between 'Lytic' versus 'Lysogenic' phage types.
Insights
Bacteriophages (phages) are viruses that infect bacteria. This study categorizes phage infection strategies and proposes clearer terminology, moving beyond the ambiguous "lytic or lysogenic" classification for better understanding of phage biology.
Area of Science:
- Microbiology
- Virology
- Bacteriophage Research
Background:
- Bacteriophages (phages) are bacterial viruses crucial for microbial community structure.
- Phages are utilized in phage therapy for bacterial biocontrol, targeting pathogenic bacteria.
- Current phage classification often relies on the ambiguous term 'lytic or lysogenic'.
Purpose of the Study:
- To categorize bacteriophages based on their infection strategies.
- To review and suggest more accurate and distinguishing terminology for phage classification.
- To address the limitations of the 'lytic or lysogenic' dichotomy.
Main Methods:
- Categorization based on virion release (productive vs. lysogeny/pseudolysogeny/carrier state).
- Classification by virion release mechanism (lytic vs. chronic).
- Assessment of genetic capacity for lysogenic cycles (temperate vs. non-temperate).
Main Results:
- Phage infection strategies can be differentiated by virion release, release mechanism, and lysogenic cycle potential.
- The dichotomy of 'lytic or lysogenic' is considered insufficient and potentially misleading.
- Alternative, less ambiguous terminology is proposed for distinguishing phage types.
Conclusions:
- A refined classification system for bacteriophages is proposed.
- Clearer terminology will improve the understanding and application of phage biology.
- Accurate phage categorization is essential for effective phage therapy and microbial community modulation.
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