Diversity of phage infection types and associated terminology: the problem with 'Lytic or lysogenic'

Zack Hobbs1, Stephen T Abedon2

  • 1EpiBiome, Inc., 329 Oyster Point Blvd, South San Francisco, CA 94080, USA.

Insights

Bacteriophages (phages) are viruses that infect bacteria. This study categorizes phage infection strategies and proposes clearer terminology, moving beyond the ambiguous "lytic or lysogenic" classification for better understanding of phage biology.

Area of Science:

  • Microbiology
  • Virology
  • Bacteriophage Research

Background:

  • Bacteriophages (phages) are bacterial viruses crucial for microbial community structure.
  • Phages are utilized in phage therapy for bacterial biocontrol, targeting pathogenic bacteria.
  • Current phage classification often relies on the ambiguous term 'lytic or lysogenic'.

Purpose of the Study:

  • To categorize bacteriophages based on their infection strategies.
  • To review and suggest more accurate and distinguishing terminology for phage classification.
  • To address the limitations of the 'lytic or lysogenic' dichotomy.

Main Methods:

  • Categorization based on virion release (productive vs. lysogeny/pseudolysogeny/carrier state).
  • Classification by virion release mechanism (lytic vs. chronic).
  • Assessment of genetic capacity for lysogenic cycles (temperate vs. non-temperate).

Main Results:

  • Phage infection strategies can be differentiated by virion release, release mechanism, and lysogenic cycle potential.
  • The dichotomy of 'lytic or lysogenic' is considered insufficient and potentially misleading.
  • Alternative, less ambiguous terminology is proposed for distinguishing phage types.

Conclusions:

  • A refined classification system for bacteriophages is proposed.
  • Clearer terminology will improve the understanding and application of phage biology.
  • Accurate phage categorization is essential for effective phage therapy and microbial community modulation.

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