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Updated: Mar 24, 2026

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Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation
Erik van Dijk1,2, Patrick Varilly1, Tuomas P J Knowles1
1Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.
Abstract:
The hydrophobic effect stabilizes the native structure of proteins by minimizing the unfavorable interactions between hydrophobic residues and water through the formation of a hydrophobic core. Here, we include the entropic and enthalpic contributions of the hydrophobic effect explicitly in an implicit solvent model. This allows us to capture two important effects: a length-scale dependence and a temperature dependence for the solvation of a hydrophobic particle. This consistent treatment of the hydrophobic effect explains cold denaturation and heat capacity measurements of solvated proteins.
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