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Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops.

Nathan S Watson-Haigh1, Jerico Revote2, Radoslaw Suchecki1

  • 1Australian Centre for Plant Functional Genomics (ACPFG), University of Adelaide, PMB 1, Glen Osmond, Australia.

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Summary

Developing reusable bioinformatics training materials is crucial due to high demand. This study introduces an open framework to streamline the creation and sharing of hands-on bioinformatics workshop content, improving accessibility and reuse.

Keywords:
bioinformatics; training; workshop; reusable; collaborative; open access

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Area of Science:

  • Bioinformatics and Computational Biology
  • Scientific Education and Training

Background:

  • There is a significant need for practical, hands-on bioinformatics training workshops.
  • Current methods for sharing workshop materials (e.g., PDFs, Word documents) are often difficult to reuse or adapt for new training sessions.
  • Developing new bioinformatics workshop content is resource-intensive, requiring substantial time and financial investment.

Purpose of the Study:

  • To address the challenges in creating and disseminating bioinformatics training content.
  • To propose a novel framework that facilitates the development and maintenance of reusable and shareable hands-on workshop materials.
  • To improve the efficiency and accessibility of bioinformatics education.

Main Methods:

  • Development of an open, collaborative framework specifically designed for bioinformatics training content.
  • Focus on creating modular and adaptable content components.
  • Implementation of a system to ensure content reusability and maintainability.

Main Results:

  • The proposed framework enables trainers to develop bioinformatics workshops more efficiently.
  • Content developed within the framework is designed for easy reuse and repurposing.
  • The system captures necessary information for third parties to effectively rerun workshops.

Conclusions:

  • The presented open, collaborative framework offers a practical solution for creating and maintaining reusable bioinformatics training content.
  • This approach can significantly reduce the time and cost associated with developing bioinformatics workshops.
  • Facilitating content reuse will enhance the scalability and impact of bioinformatics education globally.