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Updated: Mar 23, 2026

Spatial Separation of Molecular Conformers and Clusters
Published on: January 9, 2014
Local electric fields and molecular properties in heterogeneous environments through polarizable embedding
Nanna Holmgaard List1, Hans Jørgen Aagaard Jensen, Jacob Kongsted
1University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark. nhl@sdu.dk.
This study enhances the polarizable embedding model to include effective external field effects, improving calculations of molecular properties in complex environments like proteins. Accounting for these fields is crucial for accurate spectroscopy predictions.
Area of Science:
- Computational chemistry
- Spectroscopy
- Quantum mechanics
Background:
- The local field experienced by molecules in condensed phases differs from the external field, affecting their properties.
- The polarizable embedding (PE) model approximates direct molecule-environment coupling effects on molecular response properties.
- Existing models may not fully capture the influence of environment polarization induced by external fields.
Purpose of the Study:
- To extend the PE model to incorporate effective external field effects.
- To enable calculations of molecular properties defined with respect to the external field.
- To investigate the impact of these effects on spectroscopic properties.
Main Methods:
- Developed an extended polarizable embedding (PE) model.
- Calculated one- and two-photon absorption (1PA and 2PA) properties using a response framework.
- Studied PRODAN-methanol clusters and the fluorescent protein DsRed.
Main Results:
- Accounting for both dynamical reaction field and effective external field contributions is necessary for accurate calculations.
- Effective external field effects significantly reduced 1PA and 2PA cross-sections for DsRed's lowest π→π* transition.
- The influence of the effective external field varies with the environment's heterogeneity, causing screening or enhancement.
Conclusions:
- The extended PE model accurately reproduces quantum chemical calculations.
- Effective external field effects are critical for understanding molecular spectroscopy in condensed phases.
- Environmental heterogeneity plays a key role in modulating these effects.
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