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Updated: Mar 23, 2026

Glycomics-Guided Glycoproteomics Facilitates Comprehensive Profiling of the Glycoproteome in Complex Tumor Microenvironments
Published on: February 7, 2025
Glycomic Approaches for the Discovery of Targets in Gastrointestinal Cancer
Stefan Mereiter1, Meritxell Balmaña2, Joana Gomes3
1Instituto de Investigação e Inovação em Saúde (I3S), University of Porto, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto (IPATIMUP), Porto, Portugal; Institute of Biomedical Sciences of Abel Salazar (ICBAS), University of Porto, Porto, Portugal.
Abstract:
Gastrointestinal (GI) cancer is the most common group of malignancies and many of its types are among the most deadly. Various glycoconjugates have been used in clinical practice as serum biomarker for several GI tumors, however, with limited diagnose application. Despite the good accessibility by endoscopy of many GI organs, the lack of reliable serum biomarkers often leads to late diagnosis of malignancy and consequently low 5-year survival rates. Recent advances in analytical techniques have provided novel glycoproteomic and glycomic data and generated functional information and putative biomarker targets in oncology. Glycosylation alterations have been demonstrated in a series of glycoconjugates (glycoproteins, proteoglycans, and glycosphingolipids) that are involved in cancer cell adhesion, signaling, invasion, and metastasis formation. In this review, we present an overview on the major glycosylation alterations in GI cancer and the current serological biomarkers used in the clinical oncology setting. We further describe recent glycomic studies in GI cancer, namely gastric, colorectal, and pancreatic cancer. Moreover, we discuss the role of glycosylation as a modulator of the function of several key players in cancer cell biology. Finally, we address several state-of-the-art techniques currently applied in this field, such as glycomic and glycoproteomic analyses, the application of glycoengineered cell line models, microarray and proximity ligation assay, and imaging mass spectrometry, and provide an outlook to future perspectives and clinical applications.
Insights
Altered glycosylation in gastrointestinal (GI) cancers offers new biomarker targets. Advanced glycomic and glycoproteomic analyses are improving early detection and patient survival rates for GI malignancies.
Area of Science:
- Oncology
- Biochemistry
- Glycoscience
Background:
- Gastrointestinal (GI) cancers are a leading cause of cancer mortality, often diagnosed late due to a lack of reliable serum biomarkers.
- Current serum biomarkers for GI tumors have limited diagnostic utility, contributing to low survival rates.
- Glycosylation changes in glycoconjugates are implicated in cancer progression, including cell adhesion, signaling, invasion, and metastasis.
Purpose of the Study:
- To review major glycosylation alterations in GI cancers (gastric, colorectal, pancreatic).
- To discuss current serological biomarkers and recent glycomic/glycoproteomic findings in GI oncology.
- To explore the role of glycosylation in cancer cell biology and emerging analytical techniques.
Main Methods:
- Review of current literature on glycosylation alterations in GI cancers.
- Analysis of recent glycomic and glycoproteomic studies.
- Discussion of advanced techniques including glycoengineered cell models, microarrays, proximity ligation assays, and imaging mass spectrometry.
Main Results:
- Significant glycosylation alterations are observed across various GI cancers.
- Glycosylation impacts key cancer cell functions, influencing adhesion, signaling, invasion, and metastasis.
- Novel biomarker targets are emerging from glycomic and glycoproteomic data.
Conclusions:
- Glycosylation represents a critical area for developing novel diagnostic and prognostic biomarkers in GI cancer.
- Advanced analytical techniques are crucial for identifying and validating these biomarkers.
- Future research focusing on glycosylation holds promise for improving early detection and patient outcomes in GI oncology.
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