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Updated: Mar 23, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Oxidative stress at low levels can induce clustered DNA lesions leading to NHEJ mediated mutations
Vyom Sharma1, Leonard B Collins1, Ting-Huei Chen2
1Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, Chapel Hill, NC 27599, USA.
Abstract:
DNA damage and mutations induced by oxidative stress are associated with various different human pathologies including cancer. The facts that most human tumors are characterized by large genome rearrangements and glutathione depletion in mice results in deletions in DNA suggest that reactive oxygen species (ROS) may cause gene and chromosome mutations through DNA double strand breaks (DSBs). However, the generation of DSBs at low levels of ROS is still controversial. In the present study, we show that H2O2 at biologically-relevant levels causes a marked increase in oxidative clustered DNA lesions (OCDLs) with a significant elevation of replication-independent DSBs. Although it is frequently reported that OCDLs are fingerprint of high-energy IR, our results indicate for the first time that H2O2, even at low levels, can also cause OCDLs leading to DSBs specifically in G1 cells. Furthermore, a reverse genetic approach revealed a significant contribution of the non-homologous end joining (NHEJ) pathway in H2O2-induced DNA repair & mutagenesis. This genomic instability induced by low levels of ROS may be involved in spontaneous mutagenesis and the etiology of a wide variety of human diseases like chronic inflammation-related disorders, carcinogenesis, neuro-degeneration and aging.
Insights
Low levels of hydrogen peroxide (H2O2) cause DNA damage, specifically oxidative clustered DNA lesions (OCDLs) and DNA double-strand breaks (DSBs). This genomic instability contributes to mutagenesis and various human diseases.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Oxidative stress and DNA damage are linked to human pathologies like cancer.
- Reactive oxygen species (ROS) may cause mutations via DNA double-strand breaks (DSBs), but DSB generation at low ROS levels is debated.
Purpose of the Study:
- To investigate if biologically-relevant levels of hydrogen peroxide (H2O2) induce DNA double-strand breaks (DSBs).
- To determine the role of the non-homologous end joining (NHEJ) pathway in repairing H2O2-induced DNA damage.
Main Methods:
- Treatment of cells with low levels of H2O2.
- Quantification of oxidative clustered DNA lesions (OCDLs) and DSBs.
- Utilizing a reverse genetic approach to assess the NHEJ pathway's contribution.
Main Results:
- Biologically-relevant H2O2 levels significantly increased OCDLs and replication-independent DSBs.
- H2O2, even at low concentrations, induced OCDLs and DSBs specifically in G1 cells.
- The NHEJ pathway plays a significant role in repairing H2O2-induced DNA damage and mutagenesis.
Conclusions:
- Low-level ROS, specifically H2O2, can induce OCDLs and DSBs, challenging previous assumptions.
- This ROS-induced genomic instability may contribute to spontaneous mutagenesis and diseases such as cancer and neurodegeneration.
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