Typing of Pneumocystis jirovecii by multilocus sequencing: evidence of outbreak?
M Depypere1, V Saegeman2, K Lagrou2,3
1Department of Microbiology and Immunology, KU Leuven - University of Leuven, B-3000, Leuven, Belgium. Melissa.depypere@gmail.com.
Abstract:
Different reports of Pneumocystis jirovecii pneumonia (PcP) outbreaks on oncology and transplant units suggest the possibility of a person-to-person transmission. Based on these reports, we searched retrospectively for possible PcP clusters in UZ Leuven in 2013. A movement and transmission map was established for all patients (n = 21) with a positive PcP PCR on BAL fluid. BAL fluid samples from all patients with a positive PCR on the mitochondrial large subunit mRNA of P. jirovecii and possible cross exposure were typed with multilocus sequence typing (MLST). Five patients with a positive PcP PCR could have contact with another PcP patient. Another five patients with a weak positive PcP PCR on BAL fluid during the same period were also included. Based on the MLST typing of the BAL samples of these ten patients, there was no evidence of a PcP outbreak in UZ Leuven in 2013. MLST has proven to be a useful tool in genotyping and outbreak detection. From this case series, it could be concluded that current infection control precautions for P. jirovecii are appropriate in UZ Leuven. However, there is need for an international Pneumocystis database and more clarity in the geographic distribution of different P. jirovecii genotypes.
Insights
This study investigated potential Pneumocystis pneumonia (PcP) outbreaks in a hospital, finding no evidence of transmission. Current infection control measures for PcP are deemed appropriate, but a need for a global Pneumocystis database exists.
Area of Science:
- Infectious Diseases
- Medical Microbiology
- Epidemiology
Background:
- Reports suggest person-to-person transmission of Pneumocystis jirovecii pneumonia (PcP).
- Oncology and transplant units are particularly susceptible to PcP outbreaks.
Purpose of the Study:
- To retrospectively investigate possible PcP clusters at UZ Leuven in 2013.
- To assess the effectiveness of current infection control precautions for PcP.
Main Methods:
- Established a movement and transmission map for 21 patients with positive PcP PCR on BAL fluid.
- Utilized multilocus sequence typing (MLST) to genotype P. jirovecii from BAL fluid samples.
- Included ten patients with positive or weakly positive PcP PCR and potential cross-exposure.
Main Results:
- No evidence of a PcP outbreak was found in UZ Leuven in 2013 based on MLST typing.
- MLST proved effective for PcP genotyping and outbreak detection.
- Current infection control precautions for P. jirovecii at UZ Leuven appear adequate.
Conclusions:
- The study did not identify a PcP outbreak, suggesting existing infection control measures are sufficient.
- There is a need for an international Pneumocystis database.
- Further clarity on the geographic distribution of P. jirovecii genotypes is required.
Related Concept Videos
Investigation of Disease Outbreaks
Steps in Outbreak Investigation
Atypical Pneumonia
Pneumonia II: Pathophysiology
Pneumonia I: Introduction
Risk Factors
Various factors influence the likelihood of developing pneumonia. Age plays a crucial role, with infants, children under two, and individuals over 65 at increased risk due to their...
Modern Molecular Taxonomy


