ATG9A loss confers resistance to trastuzumab via c-Cbl mediated Her2 degradation
Joao Nunes1, Hua Zhang1, Nicos Angelopoulos1
1Department of Surgery and Cancer, Division of Cancer, Imperial College London, Hammersmith Hospital Campus, London, UK.
Abstract:
Acquired or de novo resistance to trastuzumab remains a barrier to patient survival and mechanisms underlying this still remain unclear. Using stable isotope labelling by amino acids in cell culture (SILAC)-based quantitative proteomics to compare proteome profiles between trastuzumab sensitive/resistant cells, we identified autophagy related protein 9A (ATG9A) as a down-regulated protein in trastuzumab resistant cells (BT474-TR). Interestingly, ATG9A ectopic expression markedly decreased the proliferative ability of BT474-TR cells but not that of the parental line (BT474). This was accompanied by a reduction of Her2 protein levels and AKT phosphorylation (S473), as well as a decrease in Her2 stability, which was also observed in JIMT1 and MDA-453, naturally trastuzumab-resistant cells. In addition, ATG9A indirectly promoted c-Cbl recruitment to Her2 on T1112, a known c-Cbl docking site, leading to increased K63 Her2 polyubiquitination. Whereas silencing c-Cbl abrogated ATG9A repressive effects on Her2 and downstream PI3K/AKT signaling, its depletion restored BT474-TR proliferative rate. Taken together, our findings show for this first time that ATG9A loss in trastuzumab resistant cells allowed Her2 to escape from lysosomal targeted degradation through K63 poly-ubiquitination via c-Cbl. This study identifies ATG9A as a potentially druggable target to overcome resistance to anti-Her2 blockade.
Insights
Loss of autophagy related protein 9A (ATG9A) drives trastuzumab resistance in cancer cells by stabilizing Her2. Restoring ATG9A may overcome anti-Her2 therapy resistance.
Area of Science:
- Oncology
- Molecular Biology
- Cell Biology
Background:
- Trastuzumab resistance is a major clinical challenge in HER2-positive cancers.
- Mechanisms of trastuzumab resistance, particularly acquired or de novo resistance, are not fully understood.
Purpose of the Study:
- To investigate the proteomic changes associated with trastuzumab resistance.
- To identify novel molecular targets for overcoming trastuzumab resistance.
Main Methods:
- Stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics.
- Comparative proteomic analysis of trastuzumab-sensitive and resistant cell lines (BT474, BT474-TR, JIMT1, MDA-453).
- Functional assays including ectopic expression, gene silencing, and assessment of protein levels, phosphorylation, stability, and ubiquitination.
Main Results:
- Autophagy related protein 9A (ATG9A) was identified as downregulated in trastuzumab-resistant cells.
- Ectopic ATG9A expression reduced proliferation, Her2 protein levels, AKT phosphorylation, and Her2 stability in resistant cells.
- ATG9A promoted c-Cbl recruitment to Her2, leading to increased Her2 polyubiquitination and lysosomal degradation.
- Silencing c-Cbl abrogated ATG9A's effects and restored proliferation in resistant cells.
Conclusions:
- Loss of ATG9A contributes to trastuzumab resistance by preventing Her2 lysosomal degradation.
- ATG9A regulates Her2 stability and signaling through c-Cbl-mediated ubiquitination.
- ATG9A represents a potential therapeutic target to overcome resistance to anti-HER2 therapies like trastuzumab.
Related Concept Videos
Targeted Cancer Therapies
There are several types of targeted therapies against...
Treatment Resistant Cancers
Loss of Tumor Suppressor Gene Functions
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
Loss of Tumor Suppressor Gene Functions
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase


